LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi1g0620	ATGGATGATGATGGGGGATTGAACATGCGCAATTGGGGATATTACGAACCGGCCTTTAAAGGGCATCTCAATCTGCAGCTCATGTCATCCGTGGCAGAGCGTGACACTAAACCCTTTTTACCTGGCCGGGATTCTCCCTTGATGGTTAGTGCCAATGGAGCCTTTCACCCAAGGGATTGCATGGTTTCTGAAGCACCAGTACACATGGACTATGTGAGAGACAGTTGGATAAACCAGAGGGATAAGTTCCTAAATATATTACCTGGAAACTCAAATTTTCAGGTTCTTCCAGAAGCTCCCCTTGGAAAAGAGAAGTTTTACCATTCGACCGAAGCTCATCCCATGCAGATTATACAGCAGCCTGAACCATCAAAAGATGAGAGGGTTGGCAGGATGGAAGATTCAGACCTTAAAAAGGAAGGCGGCCCTTTGAAGAAAAGGACAGGTGGTGGAGCCCCTAAAACCCCAAAAATTAGGAAGACTAAGAAGGGGCCTTCTGTGCCAAAGGATGGTACTAACTCTTCTGTTCAACGTGTGAAACCAGCGAAGAAAAATATGGATGTTGTCATAAATGGGATTGATATGGACATTTCTGGTATTCCTATACCTGTTTGCTCATGCACAGGAAACCCACAGCAATGTTATCGTTGGGGATGTGGTGGTTGGCAATCAGCTTGTTGTACCACAAGTATATCAATGTATCCGTTGCCTATGAGCACCAAACGGCGTGGCGCAAGGATAGCTGGACGGAAAATGAGTCAAGGTGCGTTCAAGAAGGTGTTGGAGAAACTTGCAGCTGAAGGTTACAATTTTGCCAACCCAATAGATTTGAGGCGTCACTGGGCAAAACATGGTACCAACAAGTTCGTAACAATCAGGTAG	882	0.4569	MDDDGGLNMRNWGYYEPAFKGHLNLQLMSSVAERDTKPFLPGRDSPLMVSANGAFHPRDCMVSEAPVHMDYVRDSWINQRDKFLNILPGNSNFQVLPEAPLGKEKFYHSTEAHPMQIIQQPEPSKDERVGRMEDSDLKKEGGPLKKRTGGGAPKTPKIRKTKKGPSVPKDGTNSSVQRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGTNKFVTIR*	294

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi1g0620	293	MobiDBLite	consensus disorder prediction	112	183	-	-
	Vvi1g0620	293	PANTHER	-	1	293	IPR010409	-
	Vvi1g0620	293	SMART	GAGA_bind_2	1	293	IPR010409	-
	Vvi1g0620	293	MobiDBLite	consensus disorder prediction	124	145	-	-
	Vvi1g0620	293	Pfam	GAGA binding protein-like family	1	293	IPR010409	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi1g0620	Vvi-Chr1	6173926	6174807	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi1g0620	1	293	BBR or BPC Transcription factor family	AT2G01930	53.871	1.28e-105	307

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BBR-BPC	Vvi1g0620		GAGA_bind	2.5e-116	No_clan