Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0607 ATGTCTCTAGATGAACGAACAGGTTCCGGTTTCATCTCTCAGGACCTTTACCTCCATGGATTCTTCAGCGCTTCGATCAAGTTGCCTGCAGATTATACAGCAGGAGTTGTCGTCGCGTTTTATATGTCAAATGCAGATATGTTCGAGGCAAACCATGATGAACTAGACTTTGAGTTCTTGGGTAACATTAGAGGCAAGGATTGGAGGATTCAGACCAATGTTTATGGCAATGGAAGCACCAACGTGGGAAGGGAAGAGAGATACCACCTCTGGTTCGATCCTTCTGAAGATTTCCATCAGTACAGTATTCTCTGGAGTGATAATCTGATCATATTTTACGTGGACAATGTTCCTATCAGAGAGATAAAGAGGACTGAAGCAATGGGCGGGGACTTCCCCTCCAAGCCAATGTCTTTATATGCCACTATATGGGATGGGTCGGAGTGGGCTACCAATGGAGGCAGATACAGAGTGAATTACAAATATGCTCCTTATGTGGCAGAATTTTCTAACCTGGTTCTACATGGCTGTGCTGTTGACCCAATTGAGAAGTCACCGAAGTGTGACAATGGTCCTACTTCTAAAGCAAGTATCCCCACAGGCATCATGCCAGAGCAGAGGAGCAAGATGGAGAAGTTCAGGAAGACGCACATGACATATTCCTATTGCTATGATCGTGTTCGATACACAGTCCCTCCATCTGAGTGCGTGGTTAATGCCCAGGAAGCAGAGCGTCTGCGAAGGTTCGACCCAGTCACATTTGGAGGGCGGCGCCACCACCACCATGGGAAGCGGCACCAGAGGAACCGATCAAGCCAAGGCGAGGCTACTACCATTTAA 840 0.4738 MSLDERTGSGFISQDLYLHGFFSASIKLPADYTAGVVVAFYMSNADMFEANHDELDFEFLGNIRGKDWRIQTNVYGNGSTNVGREERYHLWFDPSEDFHQYSILWSDNLIIFYVDNVPIREIKRTEAMGGDFPSKPMSLYATIWDGSEWATNGGRYRVNYKYAPYVAEFSNLVLHGCAVDPIEKSPKCDNGPTSKASIPTGIMPEQRSKMEKFRKTHMTYSYCYDRVRYTVPPSECVVNAQEAERLRRFDPVTFGGRRHHHHGKRHQRNRSSQGEATTI* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0607 279 SUPERFAMILY Concanavalin A-like lectins/glucanases 3 239 IPR013320 -
Vvi1g0607 279 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 1 169 IPR000757 GO:0004553|GO:0005975
Vvi1g0607 279 Pfam Glycosyl hydrolases family 16 2 161 IPR000757 GO:0004553|GO:0005975
Vvi1g0607 279 MobiDBLite consensus disorder prediction 254 268 - -
Vvi1g0607 279 Gene3D - 1 236 - -
Vvi1g0607 279 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 201 236 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Vvi1g0607 279 MobiDBLite consensus disorder prediction 250 279 - -
Vvi1g0607 279 CDD GH16_XET 2 236 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vvi1g0607 279 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 2 236 IPR044791 GO:0004553
Vvi1g0607 279 PIRSF EndGlu_transf 1 241 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0607 Vvi-Chr1 6044596 6046787 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0607 1 276 Glycoside Hydrolase AT2G01850 71.583 2.20e-152 427