Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0603 ATGTTGATGAGGGACAAAGATCTCTCCCATGGATCAGATAATTGTCAATCCACGCTCTCAAGACGCGTTTCCGACCAAAACCTTGAGATTCCAGAAGAGAAAATCGGGTTTCCTGAAAAGGGCATCGAGTTTCTCAGAGAGTCGGGGATGGGTCGTGATGGGTTTCAATCGAAACCCTTAAAAATTGGGACCTCAGGGTCTCAAGAGTTGACTCTTAGCTATCTTTGTGATCCTTCCAAATTGGGGTTTTCCGAGAAAGAACTTCCCGGAAAAAATTACCTGAATTCCCTGGACAAAGTTAGTTTCAAAGGAAAAGAGGTGATTACGGAGGATCCGAATCAAGAGGACAGATGGGTGGAGAGAGATTTCCTGAATTTGAACGAAATTAGGGGAAATTCCTCCAAGCGAGAGGTCGAAGAGGAGGCTGAAAGAGAGACTAGAGAGAAGAAACCGAAGCTGGAAACTCTCAATCTCTCTCTAGCCTTGCCTGATGTGTCGCTCTCTCTAACCGCGTCCAATCCGGTGCAAAATGCGGGGCCTCCTGTTCGGCCTAGGCCTAGCAGGAGCATACAATCTCTGGAACCCTCTAACAACAATACCCAAACAACATGTTCTAATGATTTCACAGCAGCATCCTTGTCGTATTCCTATTCTCACCCATTTTCTCACAACCCCAGTTGTTCACTCACCCGTAATTCTACTGAGAATTATGAGTATTCAGTTGGGAGAGAGGCTGACCAAATTTGGAATTGCGGGGAGGGTACTAATGGGTCCGTTCACAGTCGGTTTAAGCCTATTGGTGATGGGGTAGGTTTGTCAAATCACGGCGGTGGAGTTTATCCATTGATGCAAGGTAGTCGTATGATCAATAAGGAGCCATGCAATAGTCTTCATAGGGCAGCAAGCTCTGAAAACCATTCATTCTTCCCCTCCGAATTGCCTGCAAGGCCGAGAATGGATACTCAATCCGGGGACTCGAGAGGGAAAGGTTCTGAGCATTTGAGAGGTTTAGAAAATTTGGATGGAGGAAGGGCTCGGAAGCTTTCTAGGCCGGAGAGGATTCTCCGAGAAATTGTATCCGACTCTGTCCCTCTCATGGCTCAAATAATTCAGGAGCTTCCCAATGAAACAGTTGAATCTACTAAGGAGTACTTGAAGAATATAATTGCAGCACCTGAGAAGGAGGAGTTGGTTGACCTCCAGAACCGGCTTGAGAGGAGATCTGATCTTACTTCTGAGACTCTCTCCAAGTGCCACAAAGATCAACTAGACATTTTTGTTGCAGTGAAAATGGGTCTTGGAAACTTCTTATCGGGTAAAAATCGTCTCCCTAATACCGAGTTGGTGGAGATTTTCTTGCTCACCAGATGTCGAAATGTGAATTGCAAGGCCATGTTGCCTGTAGATGATTGTGAATGCAAAATTTGCTCAGCAAACAAGGGATTTTGCAGGGAATGCATGTGTCCCGTCTGTGTGAAATTCGATTGCGCAAACAACACTTGTAGTTGGGTTGGCTGTGATTTTTGCTTCCATTGGTGCCATGCTGCCTGTGGCATTCAGAAGAATCTCATTAAACCAGGTCCTAGCTTGAAGGGGCCTTCAGGGACTACTGAAATGCAATTTCACTGCATTGGGTGTGATCATCCTTCCGAGATGTTTGGGTTCGTTAAAGATGTGTTTTTTGCCTGTGCAAAGAACTGGGGTGTAGAAACCCTGATAAAGGAACTTGACTGCGTTAGGAAGATTTTCAGGGGAAGTGAAGATTACAAAGGCAAGGAGCTGTACAATAAGGCTGAAGAGATGCTCTGCAAGCTTGAAAGTAAAATGATATCTCCTTCAGATGTCTGCAATTACATCATTCAATTTTTCAAATACACAGATGGCATGTCAGATTTTCCTGCTGCTGGTGTAGTTTTGAAAGACTTGACAGCAACTCAGGCAAGCCTTAGAAAAGATGCAGCTCCTCTTCCACCACCTACTTCTCTCTCTCCAAAATCTTCCATTTACAATATGAGCTCTTCAAGTGTACAGCGGGATCTGCTGCTGCATGATCTCCGTCAGAATGACCTCAAAGCCTCCCTCATTGGTGATCTAAAGACCAACGATGAATTTCGGTTTGGGAAGTCATCTAATAAAGATATGTTTGATAGCTTGGAAAGCATTGTACGGATTAAGGAAGCCGAAGCCAGGATGTTCCAGAATCGGGCAGATGAAGCCCAGAGAGAAGCAGAGGGGTACCGACGGATGGTCCATGCAAAGACAGAGAAGTTGGAAGAGGAGTATACTGAAAAGCTTGCCAAACTATGTTTGCAGGAAACTGAGGAAAGGCGGAGGAAGAAACTGGAGGAGCTGAAGGTGCTGGAAAATTCACATTGTGATTACTACAACATGAAGATGAGAATGCAAGCTGAAATTGCTGGGTTGTTGGAGAGAATGGAGGCCACCAAGCAGCAGTGGGTGTAA 2463 0.4527 MLMRDKDLSHGSDNCQSTLSRRVSDQNLEIPEEKIGFPEKGIEFLRESGMGRDGFQSKPLKIGTSGSQELTLSYLCDPSKLGFSEKELPGKNYLNSLDKVSFKGKEVITEDPNQEDRWVERDFLNLNEIRGNSSKREVEEEAERETREKKPKLETLNLSLALPDVSLSLTASNPVQNAGPPVRPRPSRSIQSLEPSNNNTQTTCSNDFTAASLSYSYSHPFSHNPSCSLTRNSTENYEYSVGREADQIWNCGEGTNGSVHSRFKPIGDGVGLSNHGGGVYPLMQGSRMINKEPCNSLHRAASSENHSFFPSELPARPRMDTQSGDSRGKGSEHLRGLENLDGGRARKLSRPERILREIVSDSVPLMAQIIQELPNETVESTKEYLKNIIAAPEKEELVDLQNRLERRSDLTSETLSKCHKDQLDIFVAVKMGLGNFLSGKNRLPNTELVEIFLLTRCRNVNCKAMLPVDDCECKICSANKGFCRECMCPVCVKFDCANNTCSWVGCDFCFHWCHAACGIQKNLIKPGPSLKGPSGTTEMQFHCIGCDHPSEMFGFVKDVFFACAKNWGVETLIKELDCVRKIFRGSEDYKGKELYNKAEEMLCKLESKMISPSDVCNYIIQFFKYTDGMSDFPAAGVVLKDLTATQASLRKDAAPLPPPTSLSPKSSIYNMSSSSVQRDLLLHDLRQNDLKASLIGDLKTNDEFRFGKSSNKDMFDSLESIVRIKEAEARMFQNRADEAQREAEGYRRMVHAKTEKLEEEYTEKLAKLCLQETEERRRKKLEELKVLENSHCDYYNMKMRMQAEIAGLLERMEATKQQWV* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 755 777 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 716 736 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 369 391 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 469 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 494 514 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 407 422 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 567 586 IPR004082 -
Vvi1g0603 820 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 422 437 IPR004082 -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 322 345 - -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 133 152 - -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 189 203 - -
Vvi1g0603 820 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 132 819 IPR004082 -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 171 203 - -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 1 24 - -
Vvi1g0603 820 Pfam Coiled-coil region of Oberon 681 809 IPR032535 -
Vvi1g0603 820 Coils Coil 722 756 - -
Vvi1g0603 820 MobiDBLite consensus disorder prediction 300 345 - -
Vvi1g0603 820 Pfam PHD - plant homeodomain finger protein 457 581 IPR032881 -
Vvi1g0603 820 CDD PHD_OBE1_like 487 546 IPR047578 -
Vvi1g0603 820 Coils Coil 770 790 - -
Vvi1g0603 820 Coils Coil 798 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0603 Vvi-Chr1 6017526 6023825 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0603 375 609 PHD Gene Family AT5G57380 23.846 1.25e-11 66.2