Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0602 ATGGAGCCACCAAACTATAATGTTGAATCCGAAGATGAATCTGAAGTCAGTAGCCAAGTAGCGTCCAATGTATCCATCCAAGAGACTTCCTCTGATCCCTCCAAGGACAGCACTACGACATCATCTTGCCTCACAAATCTTATAAAGCTTCAGCCAGACCAAGGGTCTGTTTCTCTAGACTTAACACTATGTTTCAACCCCAACGACACCAAGTTGAAGGGCATGGGTGAGAGTAGCAGTGATGCAGTGGCTCAGGCTCCAGTGGCAACGGCCCCAAAGGTTTTCTCTTGCAATTATTGCCGGCGCAAGTTCTTCAGCTCACAGGCATTGGGTGGCCACCAGAATGCACATAAGAGAGAAAGGACACTGGCAAAACGGGCCATGCGGATGGGAATGTTCGCAGATAGATACACTAGTTTATCATCTCTGCCCCTTCACGGTTCTGCATTCCGGTCCCTTGGGATTGAAGCTCATTCCTCACTGCACCAAAGAATGGTACCGCTGGAAAGGCCTGATACAAGGGGCGGAGCAAGGTTTGAGCAAGGCTATTACGGGCTGCCAGTGTTCATAGAAGATGAAGAAGCAGAGCTGTTTTGGCCTGGGAGTTTTAGGCAGATCGGTGAAAGAGTTGGAGGCAGTGCAATTCCTGAATTGGCTCAAGGTCCCAATATAAATTTTGTACCAATGGCTCCCCCACCAACCACAGATTCGTCTTCACCTGATCTCACTTTAAAACTATAA 741 0.4831 MEPPNYNVESEDESEVSSQVASNVSIQETSSDPSKDSTTTSSCLTNLIKLQPDQGSVSLDLTLCFNPNDTKLKGMGESSSDAVAQAPVATAPKVFSCNYCRRKFFSSQALGGHQNAHKRERTLAKRAMRMGMFADRYTSLSSLPLHGSAFRSLGIEAHSSLHQRMVPLERPDTRGGARFEQGYYGLPVFIEDEEAELFWPGSFRQIGERVGGSAIPELAQGPNINFVPMAPPPTTDSSSPDLTLKL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0602 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Vvi1g0602 246 FunFam Zinc finger protein 2 73 141 - -
Vvi1g0602 246 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Vvi1g0602 246 Gene3D Classic Zinc Finger 78 141 - -
Vvi1g0602 246 MobiDBLite consensus disorder prediction 10 40 - -
Vvi1g0602 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 167 IPR044246 GO:0009788
Vvi1g0602 246 MobiDBLite consensus disorder prediction 1 40 - -
Vvi1g0602 246 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0602 Vvi-Chr1 6009188 6009928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0602 89 246 C2H2 Transcription Factor Family AT1G66140 50.549 2.36e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0602 None None None