Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0601 ATGATAATTTACTCCAAGTTTAGAGTGCCCTTTTGTTTCTACAGCAGAAAAAGTGGTTCTGAAACTTGGGGATTTTCTAGTTCGGGCTTGAAGTGGGAAAAAGGGAGAGGGCGAGAAGCAGAGAAAGAAGCCTTCTTGATGGGTCTGAAGATGCAGAGCCACCACTCAGTGGCGGTGAGGTTGAACGAGCAGATGGGTACCAAAAGAGGCTACACATTTATTCAAGCCAACAGGGCTTGGCTTCCAAAATTTCTGGTGTTCTGGATCATGTTGATGGCCGTTTTCAGTAACTTCGTCTACAATAAAATGGATGCTGCTAACAAGGAGAGAAGGGAGGAAGTGCTTGTGAGCATGTGTGATCAGCGAGCGAGAATGTTGCAAGATCAATTCAGCGTTAGTGTTAACCATGTTCACGCCCTCGCCATTCTCGTCTCCACCTTTCATTATTACAAAAACCCATCTGCCATTGACCAAGAAACTTTTGCTGAGTACACGGCGAGAACAGCTTTTGAGCGGCCTTTACTGAGTGGGGTGGCCTATGCACAAAGAGTGGCTTATTCAGAGAGGGAGAGATTTGAGAAGCAACATGGGTGGACTATAAAGACAATGAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGGAGGATCGGGAAAACATTTTGAGGGCTAGGGCTACTGGGAAAGCCGTCTTGACAAGCCCCTTCAGGCTGCTTGGTTCTCATCATCTTGGCGTTGTGTTGACATTCCCTGTTTACAAGTCCAAGCTTCCTCCCAACCCAACAGTGGAACAGCGCATTGAAGCAACTGCAGGATACCTTGGTGGAGCCTTTGATGTGGAGTCCCTGGTGGAGAATTTACTTGGGCAACTTGCTGGGAATCAGGCAATTTTGGTGAATGTCTATGATGTAACTAATTCTTCTGATCCCTTGGTTATGTATGGACGCCAATATCAAGATGTTGACATGTCCCTTTTGCATGAGAGCAAGCTTGACTTTGGAGATCCATTCAGGAAGCACCAAATGATATGTAGATATCATCAGAAGGAACCCACATCATGGACAAGCCTCACCACCGCATTTCTATTCTTTGTAATCGGTTTATTAGTAGGTTATATCTTGTATGGTGCCGCAATTCACATTGTTAAAGTTGAGGACGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCTGCTGATGTCGCCAAATCCCAGTTTCTGGCTACTGTTTCTCATGAAATTAGGACACCCATGAATGGCATCCTAGGAATGCTTGCTCTGCTCCTAGATACCGATTTGAGTTCAACCCAGAGAGATTATGCTCAAACTGCTCAAGCCTGTGGAAAGGCACTAATAACATTAATAAATGAAGTTCTTGACCGGGCAAAAATTGAAGCTGGAAAATTAGAGCTCGAAGCAGTCCCCTTCAACCTTCGATCCATACTAGATGATGTCCTCTCTCTATTTTCTGAGAAGTCTAGGCACAAAGGTCTTGAGCTGGCCGTGTTTGTTTCTGATAAAGTTCCTGAAATGGTTATTGGGGATCCTGGGAGATTTCGACAGATAATTACAAATCTTGTGGGCAACTCTGTTAAATTTACTGAGCGAGGGCACATATTTGTTCAAGTCCATTTAGCTGAACACACAAAGGCTCTAATGGATGCTAAAGCTGAGACATGTTTGAATGGAGGATCAGATGAAGGTTTAGTTTCGAATGGTGGCAGTCAATTTAGAACTTTAAGTGGTTGTGAAGCAGCTGATGACCAGAACAGTTGGGATAGATTTAAGCATTTAATTTTTGATGAAGATTTGCGATCTGATGCTTCAAATATAATGACAGTCACCAGTGAAGCTTCTGAGAAAGTCACTTTGATGGTGTCTGTGGAGGATACAGGAATTGGGATCCCTTTGCGTGCTCAGGGTCGAGTTTTCACACCCTTTATGCAGGCAGACAGTTCAACCTCTAGAAATTATGGAGGAACTGGTATTGGTCTGAGTATCAGCAAGTGTTTGGTAGAGCTGATGGGTGGTCAGATAAAATTCATAAGTCGGCCTCAGATTGGAAGCACATTTTCGTTTACTGCTGACTTTGGGAGGTGTAAGAAAAATGCACTTAGTGATCTGAAGAAAAGTAATTCAGATGATCTGCCTATTGGTTTTAGAGGACTAAAAGCAATTGTAGTTGATGGAAGACCGGTTAGAGCTATTGTAACCAAGTACCATCTGAAGAGACTTGGAATCCTGGTTGAAGTTGCTAATAGCATCAAGAAGGCAGTTGCAATAACTGGAAAAAATGGTTCTCTGACATCTGGAAGTGGAAATCAGCCAGATATGATTCTGGTTGAGAAGGATTCATGGATTTCTGAGGAGGATGCTGATCTGAATCTTCGGCTATTGGACTGGAAACAGAATAGACACACATTGAAATTACCTAAGATGATCCTTCTTGCAACCAATATTAGCAGTGCAGAGTTTGATAAAGCAAAGGCAGCTGGCTTTGCAGATACTGTGATCATGAAACCTTTGAGGGCTAGCATGGTTGCAGCATGTCTTCAACAAGTGCTAGGGTTGGGGAAGAAGAGGCAGCAAGGGAAAGACATGCTTAATGGATCTGCTTTTCTTCAGAGCTTACTCTGTGGCAAAAAAATATTGGTTGTTGATGACAATAAGGTAAACCGCAGAGTGGCTGCAGGTGCACTCAAAAAGTTTGGGGCTGATGTGGAGTGTGCTGAGAGTGGCAAAGCTGCATTGCAATTGCTTCAGTTACCACACAACTTTGATGCTTGCTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTGAAGCAACACGTCGAATACGGCTGATCGAGAGTAAGGCAAATGAACAGATGAATGGAGGATGCACCCCTGAGGGAGCTGCTACAAAAGGTGAGTGGCATGTGCCAATATTAGCCATGACAGCTGATGTGATTCACGCCACATACGACAAGTGCCTGAAATGTGGGATGGATGGCTATGTCTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAGGCGGTTGCGAAGTTCTTCAAATCCAAACCCATTTCAGAATCGTAA 3150 0.4378 MIIYSKFRVPFCFYSRKSGSETWGFSSSGLKWEKGRGREAEKEAFLMGLKMQSHHSVAVRLNEQMGTKRGYTFIQANRAWLPKFLVFWIMLMAVFSNFVYNKMDAANKERREEVLVSMCDQRARMLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVAYSERERFEKQHGWTIKTMKREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLDFGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETCLNGGSDEGLVSNGGSQFRTLSGCEAADDQNSWDRFKHLIFDEDLRSDASNIMTVTSEASEKVTLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGRCKKNALSDLKKSNSDDLPIGFRGLKAIVVDGRPVRAIVTKYHLKRLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDGFEATRRIRLIESKANEQMNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKFFKSKPISES* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0601 1049 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 479 717 IPR036890 -
Vvi1g0601 1049 SMART CHASE_2 152 337 IPR006189 -
Vvi1g0601 1049 CDD HisKA 425 486 IPR003661 GO:0000155|GO:0007165
Vvi1g0601 1049 CDD REC_hyHK_CKI1_RcsC-like 906 1037 - -
Vvi1g0601 1049 PRINTS Bacterial sensor protein C-terminal signature 647 661 IPR004358 GO:0016310|GO:0016772
Vvi1g0601 1049 PRINTS Bacterial sensor protein C-terminal signature 706 719 IPR004358 GO:0016310|GO:0016772
Vvi1g0601 1049 PRINTS Bacterial sensor protein C-terminal signature 682 700 IPR004358 GO:0016310|GO:0016772
Vvi1g0601 1049 PRINTS Bacterial sensor protein C-terminal signature 665 675 IPR004358 GO:0016310|GO:0016772
Vvi1g0601 1049 Gene3D - 744 886 - -
Vvi1g0601 1049 SMART HisKA_10 425 490 IPR003661 GO:0000155|GO:0007165
Vvi1g0601 1049 ProSiteProfiles Response regulatory domain profile. 747 878 IPR001789 GO:0000160
Vvi1g0601 1049 FunFam Histidine kinase 3 899 1045 - -
Vvi1g0601 1049 SMART HKATPase_4 537 722 IPR003594 -
Vvi1g0601 1049 FunFam Histidine kinase 4 156 371 - -
Vvi1g0601 1049 Gene3D CHASE domain 156 371 IPR042240 -
Vvi1g0601 1049 SUPERFAMILY CheY-like 903 1041 IPR011006 -
Vvi1g0601 1049 ProSiteProfiles CHASE domain profile. 152 364 IPR006189 -
Vvi1g0601 1049 SMART REC_2 904 1037 IPR001789 GO:0000160
Vvi1g0601 1049 CDD HATPase_EvgS-ArcB-TorS-like 542 720 - -
Vvi1g0601 1049 Gene3D - 899 1048 - -
Vvi1g0601 1049 ProSiteProfiles Histidine kinase domain profile. 432 722 IPR005467 -
Vvi1g0601 1049 SUPERFAMILY CheY-like 743 879 IPR011006 -
Vvi1g0601 1049 ProSiteProfiles Response regulatory domain profile. 905 1041 IPR001789 GO:0000160
Vvi1g0601 1049 Gene3D - 401 488 - -
Vvi1g0601 1049 Pfam CHASE domain 155 335 IPR006189 -
Vvi1g0601 1049 Gene3D - 103 155 - -
Vvi1g0601 1049 PANTHER TWO-COMPONENT HISTIDINE KINASE 65 1038 - -
Vvi1g0601 1049 FunFam Histidine kinase 4 397 488 - -
Vvi1g0601 1049 Pfam His Kinase A (phospho-acceptor) domain 425 490 IPR003661 GO:0000155|GO:0007165
Vvi1g0601 1049 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 537 720 IPR003594 -
Vvi1g0601 1049 Gene3D - 489 724 IPR036890 -
Vvi1g0601 1049 Pfam Response regulator receiver domain 906 1037 IPR001789 GO:0000160
Vvi1g0601 1049 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 411 491 IPR036097 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0601 Vvi-Chr1 5989944 5998738 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0601 55 1049 Histidine Kinase Gene Family AT2G01830 72.691 0.0 1453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi1g0601 HATPase_c 1.5e-33 CL0025