Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0600 ATGGCAGCGCTGCGAGGTCTCCTCTTCCTTGTCATGGCGTTAGCCTTTTGCTTCTTTTCAAAGACAGTAGTTGCAGATACAGGGACTGCAACCTACTATACTCCTCCATACGTTCCTTCCTCTTGCAATGGTTTTCAAGATGATGGTGTGATGATTGCGGCAGCGAGTGATGCAATCTGGGACAACCGCGGCGCTTGTGGAAGGAATTATGAGGTCAAATGCGAGGGTGCAACCAACGCTGGGGACCCTCACCCTTGCCGGGGTGATCAATCCGTGGTCGTGAAGATCGTCGACTACTGCCCACCTGGCTGTCGAGGCACCATCGACTTGTCTCAAGAAGCTTTTGCGTCCATTGCTGATCCAGATGCAGGGAAAATAAAAATATCCTTCCAACAAGTATGA 402 0.5075 MAALRGLLFLVMALAFCFFSKTVVADTGTATYYTPPYVPSSCNGFQDDGVMIAAASDAIWDNRGACGRNYEVKCEGATNAGDPHPCRGDQSVVVKIVDYCPPGCRGTIDLSQEAFASIADPDAGKIKISFQQV* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0600 133 SUPERFAMILY Barwin-like endoglucanases 10 133 IPR036908 -
Vvi1g0600 133 CDD DPBB_EG45-like 26 131 - -
Vvi1g0600 133 Gene3D - 26 133 IPR036908 -
Vvi1g0600 133 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 1-RELATED 8 132 IPR044206 GO:0009627|GO:0048046
Vvi1g0600 133 SMART dpbb_1 52 130 IPR007112 -
Vvi1g0600 133 FunFam Barwin-related endoglucanase 25 132 - -
Vvi1g0600 133 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 133 IPR007112 -
Vvi1g0600 133 Pfam Lytic transglycolase 53 129 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0600 Vvi-Chr1 5978471 5979374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0600 46 133 Miscellaneous Gene Families AT2G28950 32.353 1.21e-08 50.1