Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0598 ATGCGGGGCCAGCTTTGTGTGGTTCTTGTTTGTCTCCTCGCCCTCACCCTTAACGTGCAGTCTCAGTCCAGTTCCGGGGATGCCGATGTAATGCAGGTTTTGAAGAAGAATCTCAACCAGCCTTCCGATTTGGGGTGGTCCGACTCCGACCCCTGTAAATGGGACGGTGTGAGCTGCGATGGCGATAGACGGGTCACACGGATTCAGATCGGAGGAAAGAATCTCAAGGGTAGTCTCCCCTCGAATCTGACCGACCTCACTGCCTTGGAGATATTGGAGGTGCAGTACAACCAACTGAGTGGGCCACTGCCGAGTCTGTCTAGGTTGAGTCTTCTGCAGAGACTCCTACTCAGCAACAACAATTTCACTTCCGTACCCTCTGGTTTCTTCGATGGAATGACATCTCTTCAAACCGTGGCTCTAGACAACAACCCCTTTTCTCCATGGGTATTTCCGGTGAGTCTTCAGGCGGCTGGTTCACTAAAATCCTTCTCTGCTAATTCTGCTGGTATTTCTGGAAAATTTCCTGAAATTTTCGAAGCGTTCCCTAGTTTGACGGATTTGCATTTGGCTTTTAATTCTCTGGAAGGTGGATTGCCTTCCAGCTTCTCTGGTTCTTCAATTCAGACTTTGTGGTTGAATGGGCAAGAGAGTGCCTCCAAACTTAATGGTACAATTGAAGTGCTACAGAACATGACATCCTTGACACAGGTTTGGTTGAATATGAATAGTTTTACAGGTCCTTTGCCCGATTTTTCCAGCTTAACGAATCTGCAAGATTTGAATTTGAGGGATAATGGATTCACGGGTCCTGTTCCATCTACCTTACTGAACCTTAAGTCTCTTAAAACGGTGAATTTGACCAATAACTTGCTTCAGGGACCCATGCCGGAATTCGCAAGTTCTGTTGCAGCGGATATGGTGGGGGTGAACATGTTTTGTTTGCCTGAACCTGGTCCCTGTAGTCAAACCGTTAATACATTACTTGAGGTTGCAAAATCCATGGGATACCCGAGTAGTCTTGCCAAGAATTGGAAAGGGAATGACCCTTGTGACCAGTGGTTTGGACTCACTTGTGATGATGGAGGCATTGCAGTTGTTAATTTGCAGAAAATGGGTCTTTCGGGTACCATTTCTTCAAACTTCTCCACTCTTGGTTCATTGCAAAAATTGATTCTTGCTGATAATAATCTCACGGGTACCATACCAGCGGAGCTTACGAATCTGCAGAACCTTAGGGAGCTTGATGTCTCAAACAATCAACTTTATGGCCAAATACCAAATTTTAGGAGTAATGTCATTGTAAAAACTGAGGGTAATCCTGATATTGGAAAAGAGGGTGGTGATGACCCAAATCCAGGAACTCCATCTGGGGGTCCTCCAGACTCACCAACCTCACCTGATGCAGATTCTCCTGGAAATGGCGGCAAGAAATCTAACACTGTAGTGATTGTGGGTAGTGTTGTTGGTTCTGTTGGAGCAGTTTTCTTGATTGGATTGGTAGGTTTCTGTTTCTATAGAACAAGACAAAAGCACTTTGGGAGAGTGCAGAGTCCAAACACAATGGTGATTCATCCTCGTCATTCAGGGTCAGATAATGATGCTGTTAAAATCACAATTGCTAATTCAAGTGTTAATGGTGGAGGGAGTGAAACTTACAGTCACGCAAGTAGTGGGCCTAGTGACATCCAAATGATTGAGGCTGGAAGCATGGTAATTTCAATTCAAGTTTTAAGGAATGTGACTAACAATTTTAGTGAAGAAAATGTATTGGGAAGAGGAGGCTTTGGAACTGTATACAAGGGGGAATTGCATGATGGGACAAAGATTGCAGTGAAGAGGATGGAATCCGGAGTGGTGAGTGAGAAGGGTTTAACAGAGTTTAAATCTGAGATTGCTGTTCTTACCAAGGTTAGACACCGGCATTTGGTTGCACTTCTAGGATATTGCTTGGATGGAAATGAAAGGCTCCTTGTTTATGAATACATGCCTCAGGGGACTCTTAGTAGGCACCTATTTAATTGGAAGGAGGAAGGGATGAAACCCCTTGAGTGGATGAAAAGGTTGAGCATTGCCTTGGATGTTGCCAGAGGTGTTGAATACCTACATGGCTTAGCCCATCAGAGTTTCATCCATAGGGATCTTAAACCCTCCAATATTCTCCTTGGGGATGATATGCGGGCTAAAGTTGCAGATTTTGGATTGGTTCGTCTTGCCCCAGAAGGGAAAGCCTCAATTGAAACAAGACTAGCAGGAACTTTTGGGTATCTCGCACCAGAATATGCAGTAACGGGACGAGTAACTACCAAGGTTGATGTGTTCAGCTTTGGGGTGATTCTGATGGAGATTATCTCAGGAAGAAGAGCACTTGATGAAACTCAGCCCGAGGAGAGCATGCATCTTGTCACTTGGTTTCGGAGGATGCAAATTAACAAGGAGTCATTCCAGAAGTCCATCGACCAGACAATTGATCTTGATGAAGAAACCCTTGCCAGTATCAGCACTGTTGCCGAGCTGGCTGGCCACTGCTGTGCTAGGGAGCCTTATCAAAGACCAGACATGAGCCATGCTGTCAATGTGCTTTCATCTCTTGTTGAGCTCTGGAAACCCGCTGATCTAGATTCCGAAGACATGTATGGAATTGACCTTGATATGACCTTACCGCAGGCGCTCAAGAAGTGGCAGGCATTCGAAGGAAGTAGCCAATTGGATTCTTCATCATCTTATATTGCCAGTGCTGATAATACCCAGACCAGCATTCCCACTCGACCATATGGGTTTGCAGAATCATTTACATCTGCAGATGGGCGGTAG 2814 0.4531 MRGQLCVVLVCLLALTLNVQSQSSSGDADVMQVLKKNLNQPSDLGWSDSDPCKWDGVSCDGDRRVTRIQIGGKNLKGSLPSNLTDLTALEILEVQYNQLSGPLPSLSRLSLLQRLLLSNNNFTSVPSGFFDGMTSLQTVALDNNPFSPWVFPVSLQAAGSLKSFSANSAGISGKFPEIFEAFPSLTDLHLAFNSLEGGLPSSFSGSSIQTLWLNGQESASKLNGTIEVLQNMTSLTQVWLNMNSFTGPLPDFSSLTNLQDLNLRDNGFTGPVPSTLLNLKSLKTVNLTNNLLQGPMPEFASSVAADMVGVNMFCLPEPGPCSQTVNTLLEVAKSMGYPSSLAKNWKGNDPCDQWFGLTCDDGGIAVVNLQKMGLSGTISSNFSTLGSLQKLILADNNLTGTIPAELTNLQNLRELDVSNNQLYGQIPNFRSNVIVKTEGNPDIGKEGGDDPNPGTPSGGPPDSPTSPDADSPGNGGKKSNTVVIVGSVVGSVGAVFLIGLVGFCFYRTRQKHFGRVQSPNTMVIHPRHSGSDNDAVKITIANSSVNGGGSETYSHASSGPSDIQMIEAGSMVISIQVLRNVTNNFSEENVLGRGGFGTVYKGELHDGTKIAVKRMESGVVSEKGLTEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGTLSRHLFNWKEEGMKPLEWMKRLSIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEIISGRRALDETQPEESMHLVTWFRRMQINKESFQKSIDQTIDLDEETLASISTVAELAGHCCAREPYQRPDMSHAVNVLSSLVELWKPADLDSEDMYGIDLDMTLPQALKKWQAFEGSSQLDSSSSYIASADNTQTSIPTRPYGFAESFTSADGR* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0598 937 Pfam Protein kinase domain 586 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0598 937 Pfam Leucine rich repeat N-terminal domain 26 60 IPR013210 -
Vvi1g0598 937 Pfam Leucine rich repeat N-terminal domain 326 360 IPR013210 -
Vvi1g0598 937 Gene3D Phosphorylase Kinase; domain 1 548 662 - -
Vvi1g0598 937 ProSiteProfiles Protein kinase domain profile. 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0598 937 MobiDBLite consensus disorder prediction 437 478 - -
Vvi1g0598 937 CDD STKc_IRAK 591 864 - -
Vvi1g0598 937 PANTHER OSJNBA0070M12.3 PROTEIN 7 937 - -
Vvi1g0598 937 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
Vvi1g0598 937 FunFam Receptor-like kinase TMK4 25 319 - -
Vvi1g0598 937 FunFam receptor protein kinase TMK1 547 662 - -
Vvi1g0598 937 Pfam Leucine rich repeat 367 422 IPR001611 GO:0005515
Vvi1g0598 937 SUPERFAMILY L domain-like 42 430 - -
Vvi1g0598 937 FunFam Leucine-rich repeat receptor-like kinase 323 446 - -
Vvi1g0598 937 SUPERFAMILY Protein kinase-like (PK-like) 560 869 IPR011009 -
Vvi1g0598 937 ProSitePatterns Protein kinases ATP-binding region signature. 591 613 IPR017441 GO:0005524
Vvi1g0598 937 Gene3D Transferase(Phosphotransferase) domain 1 663 878 - -
Vvi1g0598 937 Gene3D Ribonuclease Inhibitor 24 314 IPR032675 -
Vvi1g0598 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 710 722 IPR008271 GO:0004672|GO:0006468
Vvi1g0598 937 SMART LRR_typ_2 255 279 IPR003591 -
Vvi1g0598 937 SMART LRR_typ_2 109 132 IPR003591 -
Vvi1g0598 937 SMART LRR_typ_2 385 408 IPR003591 -
Vvi1g0598 937 SMART LRR_typ_2 182 205 IPR003591 -
Vvi1g0598 937 SMART LRR_typ_2 409 431 IPR003591 -
Vvi1g0598 937 SMART serkin_6 585 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0598 937 FunFam receptor protein kinase TMK1 663 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0598 Vvi-Chr1 5948703 5952982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0598 54 867 Receptor kinase-like Gene Family AT5G07280 31.518 6.48e-90 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi1g0598 Pkinase 4.7e-48 CL0016