Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0597 ATGATTTCTTCTTGGAGAAGGCGGAGAGCTGGGCGGAGAGCAGCCAAGCTGCAGCAACACGCAGAAGATGATATTGGAAGCATGGAATTGACTACTCCTAATCATTTTCGGTGTCCGATATCTCTGGACTTGATGAAAGATCCGGTTACATTGTCCACAGGGATCACATATGATCGTGAGAGCATCGAGATGTGGATTGAAGCCGGAAACCGGACTTGCCCCATTACCAACCAGGTGTTGAGGAGTCTGGAGCCGATACCCAATCACACAATTCGGAAGATGATACAGGATTGGTGTGTCGAGAACCGGTCTTTTGGGATTGAGAGGATCCCAACGCCTCGAATTCCTTTGAGTTCTGTCGAGGTTACAGATATGCTTTCCAAGTTTAAGATGGCTTATCGGCGAGAGGATGAAGCTGGGTGCCGGGAGTTGGTGGCAAAGATGAAGTCAAAGGGGAAGGAAAGCGAGCGCAACAAGCGATGCATTGTTATCAATGGGGCTGCTGGTGTTTTATCAGCTGCATTTGAAGCATTCTCGAGTGCCTCTTTCGATAAGTATGTTGCAGTCTTGGAGGATATCTTGGCGGCTCTCACTTGGATGTCTCCTCTTGATGGAGAAGCCAAATCTTACCTTAGCTCAGCCGCGTCTTTGAATTGTTTGGTATGGCTTTTGAAGTCTGGAGATTTGTCAGCAAGAGGAAACGCTGTTTCGACATTGAAAGAGCTACTTTCTTCAGATAAACGAAAGGTGTATGCTTTGTCTGAGATAGAAGGAGCGAAAGAAGCGTTGGTGAAGCTCGTCAAAGAGCCCATTTGCCCTACTGCAACAAAAACTTCATTGGTGGTCATCTTCCATATGGTTTCATCATCTCCTTCAAATGAAGATACCAAAGTAAGGTTTGTCGAGATGGGGTTAGTGGAGCTGCTCCTAGAACTACTGGTGGACTCTGAGAAAAGCGTATGCGAGAAGGCATTGGGTGTTCTTGATGGCATTTGCGGCTGCGAGGAAGGGAGGGAAAAGGCCTACGGCCATGCTCTAACCATGCCTGTTCTGGTTAAGAAGTTATTGCGCGTTTCTGATTTGGCTACCGAGTTCTCAGTTTCCATCCTTTGGAAGCTCAGCAAAAATGAGAAGAGGGAAGATGGAAGCGTCCTTGTTGAAGCTCTTCAAGTGGGTGCTTTTCAGAAGCTCTTGTTGCTCTTACAGGTTGGATGCTCTGACCGAACAAAGGAGAAGGCGACTGAGTTGTTGAAATTGTTGAACATTCATAGGGAGAGGTTGGAGTGCATTGACTCGATGGATTTCAAGGATCTCAAAAGGCCTTTTTGA 1329 0.4688 MISSWRRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDMLSKFKMAYRREDEAGCRELVAKMKSKGKESERNKRCIVINGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNCLVWLLKSGDLSARGNAVSTLKELLSSDKRKVYALSEIEGAKEALVKLVKEPICPTATKTSLVVIFHMVSSSPSNEDTKVRFVEMGLVELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFKDLKRPF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0597 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 107 IPR013083 -
Vvi1g0597 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630
Vvi1g0597 442 FunFam RING-type E3 ubiquitin transferase 32 103 - -
Vvi1g0597 442 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g0597 442 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Vvi1g0597 442 SUPERFAMILY RING/U-box 21 107 - -
Vvi1g0597 442 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Vvi1g0597 442 SUPERFAMILY ARM repeat 169 422 IPR016024 -
Vvi1g0597 442 Gene3D - 123 419 IPR011989 -
Vvi1g0597 442 CDD RING-Ubox_PUB 33 84 IPR045210 -
Vvi1g0597 442 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0597 Vvi-Chr1 5940758 5942086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0597 5 442 U-box Gene Family AT5G37490 48.073 4.53e-131 383