Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0593 ATGGCTCTCCCCTTCCTCTGCTCTGTGCTCATTTTCACCTTCCTCTTCTGTAACCCTCCACCGTTGTCGGCCCAACCGCAACAGAACATCTCAAACTTCTCCTCCTCAGACTCCCCATGGCGACCAAGCCAAGGCCAGATTCTTCTCTCTCCCAACTCCACCTTCGCTGCCGGGTTCTGGCCGACACCCACTTCTCCAAATCTCTATATCTTCTCAATTTGGTACCTCAATATCTCTGTACACACCGATATTTGGTCCGCCAACGCCAATTCCCCGGTCAGTGGCAACGGTACCGTCTCAATTACTGCCTCCGGTGAGCTCCGGCTTGTTGATTCGTCCGGCAAGAACTTATGGCCGGGGAACGCTACGGGAAACCCAAACTCCACCAAACTGGTCCTCAGGAACGATGGTGTACTGGTTTATGGGGACTGGTCGAGTTTTGGTTCTCCGACCGATACTATTCTTCCAAATCAGCAGATAAATGGTACAAGGCTCGTCTCAAGGAACGGTAAGTATAAATTTAAGAACTCCATGAGACTGGTTTTCAACGATTCTGATAGCTACTGGAGTACGGCTAATGCGTTCCAGAAGTTGGACGAATATGGAAACGTGTGGCAGGAGAATGGAGAGAAGCAAATTTCCTCGGATCTTGGTGCTGCCTGGTTGCGTAGATTGACCCTTGACAATGATGGGAATTTGAGAGTTTACAGTTTTCAAGGAGGTGTGGATGGGTGGGTTGTTGTTTGGCTGGCTGTACCAGAAATATGCACAATTTATGGCAGATGTGGTGCTAACTCTATATGTATGAACGATGGTGGGAATTCTACTCGATGTACTTGTCCTCCCGGTTTTCAGCAAAGGGGAGATTCATGCGACAGGAAAATTCAGATGACGCAAAACACAAAGTTTCTCCGGCTTGACTACGTCAACTTCAGCGGCGGGGCCGACCAAAACAATCTGGGTGTTCAGAATTTTACCATCTGTGAATCCAAATGCTTAGCCAACCGGGATTGTCTAGGTTTTGGATTCAAATATGACGGATCGGGTTATTGCGTACTTCAGCTCAAGCGGCTGTTATATGGATACTGGTCTCCGGGAACCGAGACCGCCATGTATCTGCGGGTGGACAATTCGGAATCTGATCAAAGCAACTTCACTGGCATGACGGATTTGCTTGAAACCACATGCCCAGTCCGGATCAGCCTCCCTCTGCCGCCTGAAGAATCCAATACCACGACGCGGAACATTGTCATTATATGCACTCTCTTCGCGGCGGAGCTCATTTCCGGTGTTCTTTTCTTCTCTGCTTTTCTCAAGAAATACATCAAATACAGAGACATGGCTCGAACCCTCGGCCTAGAATTCCTTCCCGCAGGTGGCCCCAAACGATTCACGTACGCGGAGCTCAAGGCCGCGACAAATGACTTCTCCGACTGTGTCGGAAAAGGCGGGTTCGGCGACGTATACAAAGGGGAACTGCCTGATCACCGCATCGTCGCTGTGAAGTGCCTGAAAAATGTGACGGGCGGGGACCCAGAGTTTTGGGCAGAGGTCACCATCATTGCCCGTATGCATCACCTCAATCTGGTCCGCTTGTGGGGTTTCTGCGCCGAGAAGGGCCGGCGAATACTGGTCTACGAGTACGTCCCAAAGGGTTCTCTGGACAAGTTCCTCTTCCCCGCGCGTGGAATCCTTAAATCCGAAGAGGATTATGCAGAGGATGAATTGCTGGACCCGAGTAGGCCCCCGATGCTAGATTGGAATATCCGTTATCGAATCGCACTGGGCGTGGCGAGGGCGATAGCATACCTCCACGAGGAGTGTCTGGAGTGGGTGCTCCATTGCGATATCAAGCCGGAAAACATACTTCTGGGAGACGATTTCTGCCCTAAAATTTCAGATTTTGGGTTGGCGAAACTGAAGAAGAAGGAAGACATGGTGAGCATGTCAAGGATCCGAGGGACCCGCGGGTACATGGCGCCCGAATGGGTGAAGATGGATCCCATTACCCCCAAGGCTGACGTCTACAGCTTCGGAATGGTGCTTCTGGAAATTGTAAGTGGGCGAAGGAATAACGAAATCCAAGATTCCCTCACGCAGAGTGAGGACTGGTATTTCCCAAGGTGGGCTTTCGACAAGGTGTTCAAGGAAATGAGGGTGGAGGACATTCTGGACAGTCAGATCATCCACTGTTACGACAGTCGATTGCACTTTGACATGGTGGATCGCATGGTGAAGACGGCGATGTGGTGTCTTCAGGACCGACCGGAGATGCGGCCTTCCATGGGGAAGGTTGCTAAGATGCTTGAAGGAACGGTGGAGATGATGGAACCCAAAAAGCCCACCATTTTCTTCCTAGCCGACTAG 2367 0.5091 MALPFLCSVLIFTFLFCNPPPLSAQPQQNISNFSSSDSPWRPSQGQILLSPNSTFAAGFWPTPTSPNLYIFSIWYLNISVHTDIWSANANSPVSGNGTVSITASGELRLVDSSGKNLWPGNATGNPNSTKLVLRNDGVLVYGDWSSFGSPTDTILPNQQINGTRLVSRNGKYKFKNSMRLVFNDSDSYWSTANAFQKLDEYGNVWQENGEKQISSDLGAAWLRRLTLDNDGNLRVYSFQGGVDGWVVVWLAVPEICTIYGRCGANSICMNDGGNSTRCTCPPGFQQRGDSCDRKIQMTQNTKFLRLDYVNFSGGADQNNLGVQNFTICESKCLANRDCLGFGFKYDGSGYCVLQLKRLLYGYWSPGTETAMYLRVDNSESDQSNFTGMTDLLETTCPVRISLPLPPEESNTTTRNIVIICTLFAAELISGVLFFSAFLKKYIKYRDMARTLGLEFLPAGGPKRFTYAELKAATNDFSDCVGKGGFGDVYKGELPDHRIVAVKCLKNVTGGDPEFWAEVTIIARMHHLNLVRLWGFCAEKGRRILVYEYVPKGSLDKFLFPARGILKSEEDYAEDELLDPSRPPMLDWNIRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLKKKEDMVSMSRIRGTRGYMAPEWVKMDPITPKADVYSFGMVLLEIVSGRRNNEIQDSLTQSEDWYFPRWAFDKVFKEMRVEDILDSQIIHCYDSRLHFDMVDRMVKTAMWCLQDRPEMRPSMGKVAKMLEGTVEMMEPKKPTIFFLAD* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0593 788 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 193 IPR036426 -
Vvi1g0593 788 ProSitePatterns EGF-like domain signature 2. 278 291 IPR000742 -
Vvi1g0593 788 ProSiteProfiles EGF-like domain profile. 252 292 IPR000742 -
Vvi1g0593 788 Pfam D-mannose binding lectin 82 162 IPR001480 -
Vvi1g0593 788 ProSiteProfiles PAN/Apple domain profile. 291 377 IPR003609 -
Vvi1g0593 788 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Vvi1g0593 788 Gene3D Transferase(Phosphotransferase) domain 1 550 782 - -
Vvi1g0593 788 PIRSF SRK 1 217 IPR024171 GO:0004674
Vvi1g0593 788 PIRSF SRK 179 788 IPR024171 GO:0004674
Vvi1g0593 788 SMART blect_4 43 150 IPR001480 -
Vvi1g0593 788 ProSiteProfiles Protein kinase domain profile. 474 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0593 788 Gene3D Phosphorylase Kinase; domain 1 448 548 - -
Vvi1g0593 788 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Vvi1g0593 788 ProSiteProfiles Bulb-type lectin domain profile. 33 154 IPR001480 -
Vvi1g0593 788 SMART serkin_6 474 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0593 788 FunFam Serine/threonine-protein kinase 549 780 - -
Vvi1g0593 788 CDD EGF_CA 256 291 - -
Vvi1g0593 788 Pfam Protein kinase domain 479 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0593 788 CDD STKc_IRAK 480 771 - -
Vvi1g0593 788 PANTHER OS07G0415500 PROTEIN 6 784 - -
Vvi1g0593 788 Pfam S-locus glycoprotein domain 207 286 IPR000858 GO:0048544
Vvi1g0593 788 CDD B_lectin 43 150 IPR001480 -
Vvi1g0593 788 FunFam S-receptor-like serine/threonine-protein kinase 446 548 - -
Vvi1g0593 788 Gene3D - 40 151 IPR036426 -
Vvi1g0593 788 SUPERFAMILY Protein kinase-like (PK-like) 456 770 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0593 Vvi-Chr1 5848050 5850416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0593 386 783 Receptor kinase-like Gene Family AT4G18250 36.804 1.17e-76 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi1g0593 Pkinase 1.3e-44 CL0016