Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0590 ATGTTGACGAGCTTTAGCAAGCACATGTATTGCTCTGTCCAAGTGGACCATATTGATCCAAGGATTGGAGTGGATCACCAGTCGGCCTTTACACCAAACTGGACAATTACTGTTTCAGATATAAGAACAGTTAAAGTTAGCAACATCTCCTTGGCTGTCACTGAGAGGGATATTAAAGAATTCTTTTCTTTCTCTGGTGATATACAATATGTTGAAATGCAAAGGGAGGCTGAAAAGACTCAGCTTGCATATGTCACCTTCAAGAATTCACAGGGAGCAGACACAGCTGTGCTCCTGACGGGAGCCACCATAGCTGATCTTTCTGTCTCTATAACACCTGTTGACAATTATCAGCTGCCTCCTGGAGCACTTCCACCTAGCCCGGAGGAAAAGCTGCACACTACCAATTCTGCTGTTAAGAAGGGTGAAGATGTGGTGAGCACCATGCTAGCCAAGGGCTTTGTTTTGGGAAAGGATGCTATCAACAAGGCAAAAGCCTTTGATGAGCAGCATCACCTGGTCTCAAATGCCTCTGCTACAGTTGCTTCCATCGACCGTAAGATGGGTCTGAGTGAGAAGCTAAGCATTGGAACAGCTGTGGTCAATGAGAAGGTTAAAGAGATGGATGAGCGATACCAAGTGTTTGAAAAGACAAAGTCTGCCCTTGCAATTGCAGAGCAGAAGGCAAGCATTGCAGGATCTGCTATCATGAATAACCATTATGTAGCCACAGGGGCTTCTTGGGTTTCAAGCGCATTAAGCATGGTTACAAAGGCAGCTGAGGATGTGAGTGTGATGACCAGGGAGAAGGTTGGAAGGGCCGAGGAGGAAAAAAAGGAGATCATTTACAGGGAAAAGATGGGGTTTGTTAACGAATACGCACAGATTCATCTTGATGAATCACCCGCTGGTGAGCCTCCAATAGTTCCTGTTGATTCAGTTGATGACTGTAAGCTTGGAATGATATGA 969 0.453 MLTSFSKHMYCSVQVDHIDPRIGVDHQSAFTPNWTITVSDIRTVKVSNISLAVTERDIKEFFSFSGDIQYVEMQREAEKTQLAYVTFKNSQGADTAVLLTGATIADLSVSITPVDNYQLPPGALPPSPEEKLHTTNSAVKKGEDVVSTMLAKGFVLGKDAINKAKAFDEQHHLVSNASATVASIDRKMGLSEKLSIGTAVVNEKVKEMDERYQVFEKTKSALAIAEQKASIAGSAIMNNHYVATGASWVSSALSMVTKAAEDVSVMTREKVGRAEEEKKEIIYREKMGFVNEYAQIHLDESPAGEPPIVPVDSVDDCKLGMI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0590 322 Gene3D - 39 112 IPR012677 -
Vvi1g0590 322 SUPERFAMILY RNA-binding domain, RBD 31 118 IPR035979 GO:0003676
Vvi1g0590 322 SMART rrm1_1 43 112 IPR000504 GO:0003723
Vvi1g0590 322 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 41 278 - -
Vvi1g0590 322 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 105 IPR000504 GO:0003723
Vvi1g0590 322 FunFam RNA recognition motif-containing protein 38 112 - -
Vvi1g0590 322 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0590 Vvi-Chr1 5816867 5820867 Dispersed/Transposed