Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0589 ATGAGGCCCAAACGCAATCGAAAGAAGCGAAACTTCGAATCACTTCCATACAACAAGAAACTCCGGTCGAAGCTACCTCGCCGGAGACGATCTCAGATCTCTCCAATTTTGTACACGACTTCGAACTCGAATGCTGTCCGTACGAAATCTGGTTTACATGCTTTTCCATTGCGTTCAAGTTCTTCATCTTACAATTCGAGTAGAATTTCAAGTTTTCTGAGGAAGAGAGAGTTTGAGGAGATAGGAGCTTCTGGAGCAGTAACTCGAGGAAACGAGAAGGTCCGGAGAATTACTAGATCTTATTACCGACAGAAGCAGAATGAGAGAAAGTTGGAGATTGGAGACGGTGGTGTAGAAGCGTCTGAATCGTCCTGTGTGGAGTCCTGTTCTGGAGCAGATGTTCGAGTCTCTGCAGAGGCAAGTTCTAAGTTCAAGAGAAAAAATGCTGAAAATGCCAAAATAATTGGAGGAAACGAAAATCCGGAAGCAGTTCTGCGATCCGAGATTTCATCGATTCAACAAATCGCCGGTGAAAATTTGAAGTCCGATGCCAGAAACATCAAGAAATCTTCGGAAAGGAAAGACAACGACGTAACTACTTCAGTTACCTCTGGCGTGGAATTGTCTTCGGAAATGAAGTTTCAGAATGCGAGTTCACCTCTTGGAAACAGAGCTTTAGAATCTGAGATCTCGCGAAGTTCACGAAATTACGTCGATGCGAACTTCACTATTTCGAATTCTGGTTCAAATTCGGAACAGATGCCAAAGGGCTTAGTTTTTGACTGTGATCTTTGCTGCTCGGAGTATCTGTCATACGATGAGGTTTCAGATTATTCGTCCAGTCACGAGATGCTAATTTCCGAGATGCAAACGGATGTTCTCCCGGAAAATCCCGAACTAGATTTCTCCGATTACACTCCGTCTCTCTTCTTCGAGTCTGGAAGCGAATTCTCTGAGAGATCAGAGGGAGATTCGACTCGGTCACCCACTTTCTCGTTGTTTGTTCAGTATAATCAGCAATTTTCCAGATTAGCTTCTCGTCTTGATGCACGAGTTTCTTCATCACTCTTGTTGAGGTTCGAAGACGAGGACGACGAAGAGAGCTACCAGAGGTTCAGAAGCAGAGAGAGAAAAGCGTGCCTACATGACTATGGCAAAGAATACTGCTCCAAGACGGAGTACGGCGGTCTCGTCGCCGAGCAGCGGTTATTGATGGTACACTGGATACTTGAGCAATCTGCCGCAAAGGAACTCCAGAAAGAGACCCTGTTTCTAGGAGTAAACCTCCTTGACCGATTCCTCAGTAAAGGATTCTTCAAGAACAAAAGGAGCCTTCAAATTGTCGGAATAGCATGTCTTACACTAGCCACGAGGATAGAAGAAAACCAGCCTTACAACAGCCTGCGGCAGAAGACATTTTGCATAGGAAACAATGTGTTTAACAGGCGTGAAGTGATAGCAATGGAATGGCTGGTGCAGGAAGTTCTCAATTTCCAGTGCTTCATGCCCACCACCTACAACTTTTTATGGTTCTACCTGAAAGCTGCAAGGGCGAGTGCGGAGGTGGAGAGGATGGCCAAGTACCTGGCAGTGCTAGCGCTGCTGGACCATGAGCAGCTGTGCTACTGGCGCTCAACTGTTGCGGCAGGGTTGGTCATCCTTGCTTCTCTAGCAGCCAATCAAGATGCATCCTGCCAACGGGTCATGGAGACCCACGTAAGAACGAAAGATGATGATCTACCTGAGTGCATAAAGAGTATGGAGTGGTTGGTAAAGTACGTGTCCTAG 1788 0.462 MRPKRNRKKRNFESLPYNKKLRSKLPRRRRSQISPILYTTSNSNAVRTKSGLHAFPLRSSSSSYNSSRISSFLRKREFEEIGASGAVTRGNEKVRRITRSYYRQKQNERKLEIGDGGVEASESSCVESCSGADVRVSAEASSKFKRKNAENAKIIGGNENPEAVLRSEISSIQQIAGENLKSDARNIKKSSERKDNDVTTSVTSGVELSSEMKFQNASSPLGNRALESEISRSSRNYVDANFTISNSGSNSEQMPKGLVFDCDLCCSEYLSYDEVSDYSSSHEMLISEMQTDVLPENPELDFSDYTPSLFFESGSEFSERSEGDSTRSPTFSLFVQYNQQFSRLASRLDARVSSSLLLRFEDEDDEESYQRFRSRERKACLHDYGKEYCSKTEYGGLVAEQRLLMVHWILEQSAAKELQKETLFLGVNLLDRFLSKGFFKNKRSLQIVGIACLTLATRIEENQPYNSLRQKTFCIGNNVFNRREVIAMEWLVQEVLNFQCFMPTTYNFLWFYLKAARASAEVERMAKYLAVLALLDHEQLCYWRSTVAAGLVILASLAANQDASCQRVMETHVRTKDDDLPECIKSMEWLVKYVS* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0589 595 Gene3D - 497 595 - -
Vvi1g0589 595 Pfam Cyclin, N-terminal domain 397 499 IPR006671 -
Vvi1g0589 595 SUPERFAMILY Cyclin-like 362 499 IPR036915 -
Vvi1g0589 595 CDD CYCLIN_SDS-like_rpt2 503 592 - -
Vvi1g0589 595 PANTHER CYCLINS 317 587 IPR039361 -
Vvi1g0589 595 MobiDBLite consensus disorder prediction 1 36 - -
Vvi1g0589 595 SUPERFAMILY Cyclin-like 502 591 IPR036915 -
Vvi1g0589 595 ProSitePatterns Cyclins signature. 402 433 IPR006671 -
Vvi1g0589 595 Pfam Cyclin, C-terminal domain 503 591 IPR004367 -
Vvi1g0589 595 Gene3D - 393 496 - -
Vvi1g0589 595 SMART cyclin_7 407 494 IPR013763 -
Vvi1g0589 595 FunFam Cyclin-SDS 496 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0589 Vvi-Chr1 5806547 5811465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0589 402 590 Core Cell Cycle Gene Families AT5G25380 33.673 2.17e-24 104