Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0587 | ATGAGTGGGCCAATGGAAGAAGATAGTGCCAAGAATGAGGAAGAGGACTTTAACACAGGGCCACTTTCTGTTTTAATGATGAGTGTTAAAAATAACACTCAGGTGCTTATCAATTGTCGAAACAACAAGAAGCTTCTTGGCCGGGTGAGAGCCTTCGATAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACAGAGGTACCAAAAACTGGGAAAGGCAAGAAAAAGGCCAATCCAGTTAACAAGGATAGATTCATTAGCAAGATGTTCCTCCGTGGAGATTCTGTGATCATTGTTCTTAGAAATCCCAAGTGA | 324 | 0.4259 | MSGPMEEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK* | 108 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0587 | 107 | SUPERFAMILY | Sm-like ribonucleoproteins | 20 | 105 | IPR010920 | - | |
| Vvi1g0587 | 107 | SMART | Sm3 | 25 | 104 | IPR001163 | - | |
| Vvi1g0587 | 107 | Gene3D | - | 15 | 107 | - | - | |
| Vvi1g0587 | 107 | PANTHER | SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 | 5 | 107 | IPR027248 | GO:0008380|GO:0030532 | |
| Vvi1g0587 | 107 | FunFam | Small nuclear ribonucleoprotein Sm D2 | 15 | 107 | - | - | |
| Vvi1g0587 | 107 | ProSiteProfiles | Sm domain profile. | 22 | 107 | IPR047575 | GO:0003723 | |
| Vvi1g0587 | 107 | Pfam | LSM domain | 28 | 102 | IPR001163 | - | |
| Vvi1g0587 | 107 | CDD | Sm_D2 | 17 | 106 | IPR027248 | GO:0008380|GO:0030532 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0587 | Vvi-Chr1 | 5782281 | 5783114 | Dispersed |