Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0582 ATGGTGAAATCGACGGAAGCAGGTTCTGTAGTGCCGCCATTCTTGAAAAAATGCTATGAAATGGTTGATGATGAAGCCTCGGACGCCATAATTTCGTGGAATTTAAGCAATGACAGCTTCGTGATACGGGACACGACCGAGTTCAGTCACCAATTGCTCCCTAAGTATTTCAAGCACAATAATTTCTCAAGCTTCATGCGTCAACTCAATATCTATGGTTTCAGAAAAATTGATACAGATCACTGGGAATTTGCAAATGAAGGATTCATCAGAGGTCAAAAGCATTTATTAAAGAATATCCGTCGAAGGAAACAACTTCAGGGCCAGGATAAGCAAAAATCATCCCATCAGCGGGACAAGTCTGCTGGAGCATGTGAAGAAATTGAGGCATCCAAGCTTTGGAACGACGTGGAGATTCTCAAGACTGACAGAAATGCACTCACACAGCAGCTGGTTAAACTTAGGCAGCACCAGGAAACTGCAGAAAGTAAGTTGCTTGTCCTGAGAGAGCGCCTTCAAGGAATGGAAAAAAATCAGCAGCAGATGTTGTCATTCTTAGTGATGGCCATGCAAAGCCCTGAGTTTTTGGTTCAGTTTATGCAGCCAAAAGAAAAAAACTGGCGAATGGCTGAAGTAGGCAAAAATATGCTGGAACGAAGAGCAGAGAACGGTGAACCAGCAGCTTCTGATGTGATGATAGTAAGGTACCAGCCACCAATGGATGAAACTCCAAAGCCTCTACCAATTCCAACATCAAATTCAGAGAAATCCCTGGAGTCTGATGGGATGATAGTGAGGTACCAGCCACCAATGGATGAAACTGCAAAGCCTCTACTGATGGCAAAGTCAAATTCGGAGAAATCCTTGGAATCTGATTTTTTCATGAATATCGATTTCATGAAAATACTGATGGATGGAAACATGGGTTCTTCAGAGCATCAGGAACCACTTATTTTACCTGATTTACCCGATGATGATATCCTTGACCAGCTTCTTTTAGAGAATTTTGCAGATGCTAAATTGGATAACCAACAAGCACCTATTGATTCTGGAATGGTAATGGATCCAACAGTCAATCAAACCCAGTTGGACGAACCTCAACATTTTGAACTTCTCAACCTAGAGCAGAAAATGCCCTTAAAACGAATGGAGAAACCTTACGAGTTGGAGGTGGAATCAACTCTTCATGGAACACGGTTTGAGAAATCTCAACACTCGGAACTTCTGACCGAACAAATGGGGCAATAA 1248 0.4231 MVKSTEAGSVVPPFLKKCYEMVDDEASDAIISWNLSNDSFVIRDTTEFSHQLLPKYFKHNNFSSFMRQLNIYGFRKIDTDHWEFANEGFIRGQKHLLKNIRRRKQLQGQDKQKSSHQRDKSAGACEEIEASKLWNDVEILKTDRNALTQQLVKLRQHQETAESKLLVLRERLQGMEKNQQQMLSFLVMAMQSPEFLVQFMQPKEKNWRMAEVGKNMLERRAENGEPAASDVMIVRYQPPMDETPKPLPIPTSNSEKSLESDGMIVRYQPPMDETAKPLLMAKSNSEKSLESDFFMNIDFMKILMDGNMGSSEHQEPLILPDLPDDDILDQLLLENFADAKLDNQQAPIDSGMVMDPTVNQTQLDEPQHFELLNLEQKMPLKRMEKPYELEVESTLHGTRFEKSQHSELLTEQMGQ* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0582 415 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 240 IPR027725 -
Vvi1g0582 415 Coils Coil 137 178 - -
Vvi1g0582 415 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 Gene3D - 7 104 IPR036388 -
Vvi1g0582 415 MobiDBLite consensus disorder prediction 104 124 - -
Vvi1g0582 415 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi1g0582 415 FunFam Heat shock transcription factor 1 7 104 - -
Vvi1g0582 415 SUPERFAMILY "Winged helix" DNA-binding domain 11 103 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0582 Vvi-Chr1 5753822 5757279 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0582 1 413 HSF AT1G67970 43.192 3.31e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi1g0582 HSF_DNA-bind 4.5e-31 CL0123