Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0580 ATGGTGTCGAGATCGTATTCGAATCTCTTGGAGCTTGCCTCTGGCGAGTCTCCCTCGTTTGGACGCATGAGCCGGCGAATTCCGCGTATTATGACGGTTGCCGGCATAATATCGGATCTGGATGATGACCCATCGGAAAGTGTGTGCTCCGACCCCTCATCATCGTCGGTGCAGCGTGACCGATTAATCATAGTAGCTAATCAGCTGCCTATTAGGGCACAGAGGAAATCTGAGAACAATAATGGTTGGATATTTAGTTGGGATGAGAATTCGCTTCTCCTCCAGTTGAAAGACGGGTTAGGGGATGATGAAATTGAAGTTATATATGTAGGTTGCCTTAAGGAAGAAATTCACCCATGTGAACAAGATGAAGTTTCACAGATACTTCTTGAAACCTTCAAATGTGTCCCGACCTTTTTGCCTCCTGATCTGTTTACCAGATACTATCATGGGTTTTGTAAACAACAGTTATGGCCTTTGTTTCATTACATGTTACCCTTATCGCCGGACTTGGGTGGTAGGTTCAACCGTTCTCTATGGCAGGCCTATGTTTCCGTCAATAAGATTTTTGCTGATAGAATCATGGAAGTGATCAACCCAGAAGATGATTTTGTCTGGATCCATGATTATCATCTTATGGTGTTACCCACCTTCTTGAGGAAGAGATTCAATAGGGTGAAACTTGGGTTTTTCCTCCACAGCCCGTTCCCTTCCTCGGAGATTTATAGGACATTGCCAATTAGGGAAGAGCTTTTGCGAGCACTGTTGAATTCTGATTTAATCGGGTTCCATACCTTTGATTATGCCCGGCATTTCTTATCCTGCTGTAGCCGGATGCTGGGTCTTTCTTATGAATCGAAGCGTGGCTATATAGGCCTTGAGTATTACGGTCGAACTGTCAGCATCAAAATTCTTCCCGTTGGTATACACATGGGTCAGCTTCAGTCAGTGTTGAGCCTTCCAGAGACTGAGGAAAAGGTTGCAGAGCTTATTAAGCAGTTTTGTGATCAGGATAGGATAATGTTGCTTGGGGTGGATGATATGGACATATTTAAGGGCATAAGTTTGAAGCTATTGGCAATGGAACAGCTGCTTGTGCAGCACCCGGAGTGGCAGGGGAAGGTTGTGTTGGTGCAGATAGCCAATCCAGCAAGGGGCCGAGGGAAAGACGTGAAAGAAGTTCAGACCGAGACTTTCTCGACTGTGAAGCGGATTAATGAGACATTTGGGAAACCAGGGTATGATCCTGTTGTCTTGATTGATGAACCACTCAAGTTTTATGAGAGAATTGCTTATTATGTGGTCGCTGAGTGTTGCTTGGTCACAGCAGTGAGGGATGGGATGAATCTCATACCATACGAATACATAATTAGCCGGCAGGGAAATGAGAAATTGGATAAGGTTTTGGGTTTAGAATCATCAATTCCCAAGAAGAGCATGTTAGTTGTCTCGGAGTTTATTGGCTGCTCCCCATCGTTGAGTGGAGCAATTCGAGTGAACCCATGGAATATTGATGCAGTGGCAGATGCAATGGACTCCGCCCTGGAGATGCTGGAGCCAGAAAAACAGCTACGACATGAGAAGCATTATAGGTATGTCAGTACCCATGATGTTGGTTATTGGGCTCGTAGTTTTCTACAAGATTTGGAGAGAACTTGTAGGGATCATGTGCGAAGGAGGTGCTGGGGAATTGGGTTTGGATTAAGTTTCAGAGTTGTAGCTCTTGATCCAAACTTCAGGAAGCTCTCAATGGAGCATATAGTGTCAGCATACAAAAGGACTACAACTAGGGCAATCCTTCTAGATTATGATGGTACTTTGATGCCTCAAGCTTCTATTGATAAGGGCCCAACTCCTAAGTCCATTGAAATGCTTAAAACACTCTGCAGGGATGAGAACAATATGGTTTTAATCGTCAGTGCTAGAAGCCGGAAGAAACTTGAAGACTGGTTTTCTCCTTGTGAGAATCTGGGAATTGCTGCAGAGCATGGTTATTTTCTAAGGCCCAAGGGGGATGTGGAATGGGAAACATGTGTACCAGTGGCAGACTGTAGCTGGAAGCAAATTGCAGAGCCAGTGATGAAGCTTTACACGGAAACAACTGATGGGTCCACTATTGAAGATAAGGAAACCGCACTGGCTTGGTGTTATGAGGATGCGGATCCTGATTTTGGCTCTTGCCAAGCTAAGGAGCTTCTTGATCATCTCGAGAGTGTACTCGCGAACGAACCAGTTACTGTCAAGAGTGGACAGAGTCTTGTAGAAGTTAAGCCACAGGGCGTGAGCAAGGGAATTGTAGCTAAACGCCTGCTTTCCACCATGCAAGAGAGGGGAATGTTACCTGACTTTGTTCTGTGCATAGGAGACGACCGATCTGATGAAGACATGTTTGAGGCGATCACCAGTTCCATGGCAGGCTCGTCCATTGCTCCCAGAGCAGAAGTTTTTGCATGTACTGTTGGCCGAAAACCCAGCAAGGCCAAGTATTATCTGGATGATACAGGCGAAATTGTTAGACTGATGCAGGGCTTGGCCTCGGTCTCAGAGCAACCGGTTCCTCTATAG 2565 0.4558 MVSRSYSNLLELASGESPSFGRMSRRIPRIMTVAGIISDLDDDPSESVCSDPSSSSVQRDRLIIVANQLPIRAQRKSENNNGWIFSWDENSLLLQLKDGLGDDEIEVIYVGCLKEEIHPCEQDEVSQILLETFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEEKVAELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLVQHPEWQGKVVLVQIANPARGRGKDVKEVQTETFSTVKRINETFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLGLESSIPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMLEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHVRRRCWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKGPTPKSIEMLKTLCRDENNMVLIVSARSRKKLEDWFSPCENLGIAAEHGYFLRPKGDVEWETCVPVADCSWKQIAEPVMKLYTETTDGSTIEDKETALAWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSLVEVKPQGVSKGIVAKRLLSTMQERGMLPDFVLCIGDDRSDEDMFEAITSSMAGSSIAPRAEVFACTVGRKPSKAKYYLDDTGEIVRLMQGLASVSEQPVPL* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0580 854 Pfam Trehalose-phosphatase 600 833 IPR003337 GO:0003824|GO:0005992
Vvi1g0580 854 Gene3D Glycogen Phosphorylase B; 53 315 - -
Vvi1g0580 854 Gene3D Glycogen Phosphorylase B; 316 534 - -
Vvi1g0580 854 FunFam Alpha,alpha-trehalose-phosphate synthase 317 534 - -
Vvi1g0580 854 Gene3D - 729 852 IPR023214 -
Vvi1g0580 854 Gene3D - 596 728 IPR023214 -
Vvi1g0580 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 845 IPR001830 GO:0003824|GO:0005992
Vvi1g0580 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Vvi1g0580 854 NCBIfam HAD-IIB family hydrolase 599 800 IPR006379 -
Vvi1g0580 854 CDD HAD_TPP 598 834 - -
Vvi1g0580 854 Pfam Glycosyltransferase family 20 61 550 IPR001830 GO:0003824|GO:0005992
Vvi1g0580 854 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 596 713 - -
Vvi1g0580 854 NCBIfam trehalose-phosphatase 596 844 IPR003337 GO:0003824|GO:0005992
Vvi1g0580 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Vvi1g0580 854 SUPERFAMILY HAD-like 597 844 IPR036412 -
Vvi1g0580 854 CDD GT20_TPS 61 550 IPR001830 GO:0003824|GO:0005992
Vvi1g0580 854 FunFam Trehalose-6-phosphate synthase 10 727 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0580 Vvi-Chr1 5723080 5726397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0580 1 854 Trehalose Biosynthesis Gene Families AT1G68020 82.814 0.0 1494