Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0572 ATGAGTAAGACAATTCAGGTGTATGGATTCCCTTCTATTGTGTCTGCAGATGAAATTAAGGAATTTCTGGAGAAATATACTGGTGAAGGAACTATTGAGGCCTTAGAGATTAAGCAGCCTAGAAGTGGAGCATCAATGACGCATGCTAAAGTCCAGTTTACATCCTTTGAACTTGCAGAGTTTATTATCACATTATGTAAAAAAAAAGTATGGTATGGGCGCAATTATTTGAAGGCTCGAGAAATGGATCTTGATATTATTCCAAAGCCAAGGGCCTTTTTGCATAGTATGGATCGGATAACATTACATTTTGGCTGTCAGATGTCAGATGAACGATTTTGTGTGCTCTGGAAAGCAATAAATGTTTCTGTCAAATTTGGGTCTGGATTGAGAAAATTTTACTTTTTTCTTTCTCATGGCTCTGAGGAGTACAAGCTTGAGCTTTCCTATGAGAACATTTGGCAAATTCAACTACAGCATCCACGTGGTCAAATTACAAAATTTCTCCTAATTCAGTTACTTGGTGCTCCACAGATTTATGAGAAAGATGTACCTGTCCTCAGCTATTATTTTAAGGAAGCTCCTGATGACCAGTGGGTCAGGGAAATTGATTTTACTCCATCATGCTTTATTGGGCAATCTTTTGCGTTATGTTTGGAGCTTCCATATGGCAGTCAACTACCAAATTTTCGTGAAAATTTTGCTTATTATAAAGAAAATGATGGCAAATTCATTTTGGAGAGTGGCTCAAGTTATTCTCACAATTTGCATCTAGTTCCCATCTTGGGTCCACCTCAAGGATCTAGCTTGCCATTTCAAATATTGTTTAAGATAAATACTTTGGTTCAGAATGGGTGTTTATCAGGGCCTACTCTTGATACCAGTTTTTTCCGGTTGGTTGATCCAGAGAGGTTTCCTATTTCTTTTATAGAGCATGCCCTTGAGAAACTGTATCATTTGAAAGAGTGCTGTTATGAGCCTGTAAGGTGGCTTAGTGAGCAGTACAGAACCTACGTGAAGAAGCCAGTTGCTGGATCTCCTGCTATTTCCTTGGATACTGGATTGGTGTATGTCCGGAGGGTTCAGATTACCCCATGTAAAGTATACTTTTGTGGCCCAGAGGTTAATGTCTCCAATCGGGTTTTACGCAATTATCCTGAAGATATTGATAACTTTCTCCGTGTTTCTTTTCTAGATGAGAACTTGGAGAAAATTCATTCAACAGTTATATCTCCTCGTATGTCAAAAGAAGGAAGGCGAACTGGAGTATACAGAAGGATACTATCAATTCTTCAAAATGGCATAGTTATTGGTGATAAGAAGTTCGATTTTCTTGCCTTTTCATCAAGTCAGTTGCGGGATAATTCTGCCTGGATGTTTGCTTCAAGACCTGGGCTTACTGCTGCGGAAATCAGAAGCTGGATGGGTGATTTTTCTCAGATAAGAAATGTAGCAAAATATGCTGCCAGACTGGGTCAGTCTTTCAGCTCGTCCAAGGAAACATTGAAAGTTGCTAAGGATGAAATTGAAAATATTCCTGACATTGAAATCCATAAGGGTCGAACAACATATGTCTTCTCCGATGGAATTGGGAAAATATCTCCTCAATTGGCTCACAGAGTGGCCATAAAATGTGGTTGTAAAAGTTCTACTCCATCCGCTTTCCAGATTCGATATGGTGGGTACAAGGGTGTAGTTGCTGTTGATCCAACATCATCTAGGAAATTATCATTGAGAAAGAGCATGTTCAAGTATGAATCAGATAACACAAACCTAGATGTTTTAGCATGGAGCAAATATCAGCCTTCTTTTCTCAATCGTCAATTGATCACCCTTTTATCTACTCTCGGAGTTAAGGATCATGTTTTTGAAAAGAAGCAAAGAGCAGCTGTGGATCAACTGGACACCATCTTAAAAGATCCAGTAGCGGCACAGGAGGCACTGGAGTTGATGTCTCCAGGAGAGAACACTAATGTTCTCAAAGAAATGCTCATGTGTGGTTATAAGCCAGATGCTGAACCATTTCTTTCAATGATGCTGCAAACTTTCCGGGCTGCAAAGTTGCTGGAACTGCGCACTAAAACAAGAATATTTGTTCCAAATGGAAGGTCTATGATGGGATGTCTAGATGAAACTAGAACCTTGGAATATGGTGAAGTGTTTGTACAAATTTCTGGCACTGGAGGAAGGCAATCCTTTGGTGATTCCCTCATGTTCCGTGGAAGTGGATCACACCATGATAATTTTATTCTTGAGGGAAAGATTGTTGTTGCTAAAAATCCTTGTCTACACCCTGGTGATGTGCGGGTCCTGTGGGCTGTTAATGTGCCTACTTTGCATCATATGGTGGATTGTGTTGTTTTTCCACAAAAAGGAAAGAGACCTCACCCAAACGAATGTTCGGGGAGTGATTTGGATGGAGATATCTACTTTGTTTGTTGGGATCGTGATCTAATTCCACCTCAACAAATCAATCCCATGGATTATACCCCAGCTCCAACTAAGGTCTTGGATCATGATGTCATGATTGAGGAAGTTGAGGAGTATTTCACCAACTACATAGTGAATGACAGCTTAGGAATCATTGCAAATGCCCACACCGTCTTTGCAGATAAGGAGTACGACAAAGCATATTGTGATCCTTGCACAGAGCTCGCAAAGTTATTTTCAATTGCTGTTGACTTCCCAAAAACTGGCGTGCCTGCTGAAATACCACGTAATCTACGTGTGAAGGAATATCCAGATTTCATGGAAAAGGCTGACAAACCAACCTATGAATCACAATCTGTGATTGGAAAGCTTTTTCGAGAAGTGAAAGACATTGCACCACACAACTGTAATATAAGATCCTTCACCAGGGATGTGGCAAGGCAGTCTTATGACCCTGACATGGAAGTGGTTGGTTTTGAAGACTATGTCAGTGATGCTTTCTATTACAAAAGTGAGTATGATTATAAGTTGGGGAACCTGATGGATTATTATGGGATTAAAACAGAGAGTGAAATACTCAGTGGGAGTATCATGAGAATGTCAAAATCTTTTGATAGGAGGAAGGATGCAGAAGCCATTGGTTTGGCTGTAAAGTCCTTGAGAAAGGAAGCTAGGACATGGTTCAACAAAATGGGAAGTGAGACAGATTCTGAAGCTGACGATGTATATGCAAAAGCATCTGCTTGGTACCATGTTACTTATCATCCTGATTATTGGGGTTGTTACAATGAGGGAATGGATCGAGATCATTTCCTCAGTTTTCCATGGTGTGTTTATGACAAACTGATCCACACCAAGAGGAAGAAAATGAGTGGTAGGTCTCTACATCTGTCATCGCTGGAACGAAGACTCAGCCAAGGGTTGCGTTTGGGTTGA 3366 0.4031 MSKTIQVYGFPSIVSADEIKEFLEKYTGEGTIEALEIKQPRSGASMTHAKVQFTSFELAEFIITLCKKKVWYGRNYLKAREMDLDIIPKPRAFLHSMDRITLHFGCQMSDERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLLIQLLGAPQIYEKDVPVLSYYFKEAPDDQWVREIDFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISFIEHALEKLYHLKECCYEPVRWLSEQYRTYVKKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENLEKIHSTVISPRMSKEGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEADDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQGLRLG* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0572 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1103 IPR007855 GO:0003968
Vvi1g0572 1121 Pfam RNA dependent RNA polymerase 363 938 IPR007855 GO:0003968
Vvi1g0572 1121 SUPERFAMILY RNA-binding domain, RBD 2 75 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0572 Vvi-Chr1 5652583 5659082 Dispersed/Tandem