Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0567 ATGGCGGCTTTGCTGAAAGTGCCGCCGCAGTCGTCCGGGGGCACCAACGGGTCGTGCAAGGCCGACGTGGTGGTGTCCGATCAGTTTCCGGCGGGTCTTAGGGTTCTTGTTGTCGATGATGACGTCACTTGTTTGAAGATCCTGGAGCAGATGCTTCGACGGTGCTTGTATCATGGTATCAGCACAAAAAGACAGCCAGAAGGACCCAAGCCTGGTTTCATGGTGGAGGGTGCCACCCTAGAAACAGTCACACCAATCCCATATGATGTGGTGAATGACCTCAAGGTTACAACTTGCTCCCAGGCCACTATTGCTTTAAATATACTTCGGGAGAAGAAAGGTTGTTTTGATATTGTGCTGAGTGATGTTCATATGCCTGATATGGATGGCTATAAACTTCTTGAACATGTTGGGCTGGAAATGGACCTCCCTGTTATTATGATGTCTGCTGATGGAAGAACAAGCGCTGTGATGAGAGGAATTCGACATGGGGCTTGTGATTATTTGATTAAGCCTATTCGTGAGGAAGAGCTCAAGAATATATGGCAACATGTTGTTCGGAAAAAGTGGAACGAAAATAAAGAACATGAACATTCAGGTAGCTTAGAAGATAATGATCGGCATAAGCGAGGAGGTGAAGATGCTGAATATGCTTCTTCTGTTAATGAAGGAGCAGAAGGAATATTGAAGGGTCAGAAAAAGAGGAGGGATTCTAAGGATGAAGATGATGGCGAATTGGAAAATGAAGATCCATCTACATCAAAGAAACCACGTGTGGTGTGGTCAGTGGAACTCCATCAACAATTTGTCAGTGCTGTAAACCAACTAGGAATTGATAAGGCTGTACCAAAGAGAATTCTTGAATTAATGAATGTTCCGGGGTTAACTAGAGAAAATGTAGCAAGCCATTTGCAGAAATTCAGACTATATTTAAAGAGATTAAGTGGAGTAGCACAACAGCAAGGCGGAATTCCTAATTCTTTCTGTGGTCCAGTAGAACCAAATGTGAAACTGGGTTCGCTTGGAAGGTTTGATATTCAAGCTTTGGCTGCCTCAGGCCAAATTCCTCCACAAACATTGGCAGCCCTGCAAGCTGAGCTTTTAGGTCGACCAACAAGCAACCTAGTGTTGCCAGCGATGGACCAACCAGCTCTTCTACAAGCCTCTCTACAGGGACCCAAGTGTATCCCTGTTGAACATGGTGTGGCATTTGGTCAACCTTTGGTAAAATGCCAGACGAACATTTCCAAGCATTTTCCACCCACCGTTGTATCTACTGAGGATGTTCCTTCAGGGTTTGGAGCATGGCCATCTAATAGCCTTGGTACGGTGGGAACTAGTGGCTCTCTTGGAGGATTGAGTGCTCAGAATAATAACATTCTGATGGATATGTTGCATCAGCAGCAGCAGCATCAACAGCAACAACAACAGCAGGCTGTGATACCAGAGCCCAGTCGTTCAATTAATGTGCAGCCTTCCTGCCTTGTGGTGCCGTCTCGCACTTCAGCTAGTTTTCAGGCAGGAAATAGTCCTGCTTCGGTTAATCAGAACTGCAGTTTTAACAGAAATGCTGTTATTGATTACAGTCTTCTGACACCTCAGTCAAACAATTCCTCATTGAGTGTTGGACAAATCTCAGATGGGGATCTAAAAAATACAACTGTTCTTGGTGGGTTTTCAGCCCCAGGTTCCATTTCTCCATCGGTGTCATCTTGCTCAGTAAATGCTGGCAATAGCACCACTCGGCCAGTTCAGAATTCAACTGTAACCTTTGGTGCTCCCAGACAGTTGCCTGGGGTTGTATCTAATATTTGCGATATCCAGGGCTCTTATGGGGCTAGGTCAGGTGAAGTTCTGGATCAAGGACTGCTTAGGAATCTTGGATTTGTTGGTAAAGGAACATCCATTCCAAGCCGATTTGCTGTTGATGAACCTGAATCACCAATAAGCAACTTGAATAATGGAAAGGTCTATGGGGAGAATGAAGGAAACAGAGTGAAGCAGGAGCCAAATCTTGATTATATGGAGAATGCTAGAGTGGGTGTCCCTATGTTACCACATTTTACCCCAAATGATCTAATGAGTGTTTTCTCAGATTAG 2100 0.449 MAALLKVPPQSSGGTNGSCKADVVVSDQFPAGLRVLVVDDDVTCLKILEQMLRRCLYHGISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKVTTCSQATIALNILREKKGCFDIVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKKWNENKEHEHSGSLEDNDRHKRGGEDAEYASSVNEGAEGILKGQKKRRDSKDEDDGELENEDPSTSKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQGGIPNSFCGPVEPNVKLGSLGRFDIQALAASGQIPPQTLAALQAELLGRPTSNLVLPAMDQPALLQASLQGPKCIPVEHGVAFGQPLVKCQTNISKHFPPTVVSTEDVPSGFGAWPSNSLGTVGTSGSLGGLSAQNNNILMDMLHQQQQHQQQQQQQAVIPEPSRSINVQPSCLVVPSRTSASFQAGNSPASVNQNCSFNRNAVIDYSLLTPQSNNSSLSVGQISDGDLKNTTVLGGFSAPGSISPSVSSCSVNAGNSTTRPVQNSTVTFGAPRQLPGVVSNICDIQGSYGARSGEVLDQGLLRNLGFVGKGTSIPSRFAVDEPESPISNLNNGKVYGENEGNRVKQEPNLDYMENARVGVPMLPHFTPNDLMSVFSD* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0567 699 MobiDBLite consensus disorder prediction 193 258 - -
Vvi1g0567 699 Gene3D - 59 90 - -
Vvi1g0567 699 SMART REC_2 33 182 IPR001789 GO:0000160
Vvi1g0567 699 Gene3D - 33 249 - -
Vvi1g0567 699 Gene3D - 252 315 - -
Vvi1g0567 699 NCBIfam myb-like DNA-binding domain, SHAQKYF class 256 309 IPR006447 GO:0003677
Vvi1g0567 699 MobiDBLite consensus disorder prediction 193 216 - -
Vvi1g0567 699 CDD REC_typeB_ARR-like 35 186 - -
Vvi1g0567 699 Pfam Response regulator receiver domain 94 180 IPR001789 GO:0000160
Vvi1g0567 699 SUPERFAMILY Homeodomain-like 253 313 IPR009057 -
Vvi1g0567 699 SUPERFAMILY CheY-like 94 197 IPR011006 -
Vvi1g0567 699 MobiDBLite consensus disorder prediction 228 242 - -
Vvi1g0567 699 ProSiteProfiles Response regulatory domain profile. 34 186 IPR001789 GO:0000160
Vvi1g0567 699 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 470 IPR045279 GO:0009736
Vvi1g0567 699 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 312 IPR017930 -
Vvi1g0567 699 Pfam Myb-like DNA-binding domain 258 306 IPR001005 -
Vvi1g0567 699 FunFam Two-component response regulator 252 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0567 Vvi-Chr1 5599862 5605879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0567 104 371 Response Regulator Gene Family AT3G16857 60.563 3.30e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi1g0567 Response_reg 1.9e-16 CL0304