Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0565 ATGGCAGATGGAGGCGGAGGGAAAGAAGATGAAGAGGGTCTGTGTTCATGGAAGAGGTTAAAATGCGCCAGGGATGAAGAATTCGGGGAGGAAGTGCAACCTCTTGGCAGCTTCTTCTACCCAACGGTACCCTCCGCTTTTGTCGTCTCCGACGTTCTCGAGACCGATTTTCCCATCATTTACGTTAATTCCGTCTTCGAAACCAGCACCGGATACCGCGCCGACGAAGTCCTCGGTCGAAACTGTCGATTCTTACAATATAGGGACCCTCGCGCTCAAAGAAGACACCCTTTGGTGGATCCAGTTGTTGTTTCTGAGATCAGAAGATGCCTGGAGGAAGGTATTGAGTTCCAAGGTGAGCTCTTAAATTTCAGGAAGGATGGTACTCCCCTGGTAAACCAGCTAAGACTTGCGCCTATACATGATGATGATGGAGTTGTGACACACATAATAGGTATTCAAGTGTTTTCCGAAGCAAAAATAGATCTGAACCATGTATCATATCCAGTTTTCAAAGAGACTGGCTATCCACATGTTGATCAGTCAGGTAACTATTCTCCTGTGGGTGGACAAGCCCAACATGCCCAGCATCAAGAAATATGTGGGTTCCTTCAGTTGTCTGATGAAGTTTTGGCCCACAATATTTTATCACGCTTGACCCCAAGAGATGTTGCATCCATAGGGTCAGTCTGCCGAAGGATTCGTCAATTAACAAAGAATGAGCATGTAAGGAAGATGGTATGTCAAAATTCATGGGGAAGAGAAGTCACAGGTACACTGGAACTGATGACTAAGAAATTAGGGTGGGGTCGTCTGGCCAGGGAACTGACCACTCTGGAGGCTGTTTGTTGGAAGAAAATGACCGTTGGAGGTGCAGTGGAGCCTTCTCGTTGCAATTTCAGTGCATGTGCAGCAGGTAATCGACTTGTATTATTTGGAGGTGAGGGAGTTAACATGCAGCCAATGGATGACACATTTGTTCTCAATCTTGATGCTGCAAATCCAGAGTGGCGTCAAGTGAGTGTGAAATCATCCCCACCAGGGCGCTGGGGCCACACTCTTTCATGCCTGAATGGTTCCTGGTTGGTGGTGTTTGGGGGATGTGGGAGGCAAGGATTGCTTAATGATGTCTTTGTTCTTGACTTGGATGCCAAGCATCCAACATGGAAAGAAGTCTTTGGTGGAACTCCCCCTCTCCCTAGATCTTGGCATAGCTCTTGCACAATAGAAGGCTCCAAATTGGTTGTCTCAGGTGGATGCACGGATGCAGGGGTGCTTCTGAGTGACACCTATTTATTGGATCTCACTACAGATAAGCCCATGTGGAGAGAGATTCCAACTTCATGGGCTCCTCCCTCTAGATTGGGACATTCGCTCTCAGTTTATGGAAGGACTAAAATTCTTATGTTTGGTGGGCTTGCTAAGAGTGGGCACTTGAGGTTGCGATCAGGTGAGGCCTACACAATTGATTTGGAGGATGAGCGGCCACATTGGAGGCAACTGGAATGTAGTGGGTTCACTGGCATAGGTAGCCAGAGTGCTGTGGTTCCTCCTCCAAGACTCGATCATGTTGCTGTAAGTATGCCTTGTGGAAGGATAATCATATTTGGTGGCTCTATAGCTGGGTTGCACTCTCCTTCCCAGCTCTTCCTTTTAGATCCTTCAGAAGAGAAGCCCTCGTGGAGAATTCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACCTGTGTGGTTGGAGGGACCAGGGTCCTTGTCCTGGGTGGGCACACTGGGGAGGAGTGGATACTTAACGAATTGCACGAATTGTGCTTAGCAAGCAGGCAGGACTCGGACCAATGA 1851 0.4819 MADGGGGKEDEEGLCSWKRLKCARDEEFGEEVQPLGSFFYPTVPSAFVVSDVLETDFPIIYVNSVFETSTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNQLRLAPIHDDDGVVTHIIGIQVFSEAKIDLNHVSYPVFKETGYPHVDQSGNYSPVGGQAQHAQHQEICGFLQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNSWGREVTGTLELMTKKLGWGRLARELTTLEAVCWKKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRQVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAKHPTWKEVFGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDERPHWRQLECSGFTGIGSQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDQ* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0565 616 SUPERFAMILY F-box domain 196 255 IPR036047 GO:0005515
Vvi1g0565 616 SMART pac_2 118 159 IPR001610 -
Vvi1g0565 616 NCBIfam PAS domain S-box protein 55 153 IPR000014 -
Vvi1g0565 616 Gene3D - 197 247 - -
Vvi1g0565 616 SUPERFAMILY Galactose oxidase, central domain 284 601 IPR011043 -
Vvi1g0565 616 SUPERFAMILY PYP-like sensor domain (PAS domain) 51 154 IPR035965 -
Vvi1g0565 616 Pfam PAS domain 53 154 IPR000014 -
Vvi1g0565 616 FunFam Putative LOV domain-containing protein 480 612 - -
Vvi1g0565 616 ProSiteProfiles PAS repeat profile. 52 114 IPR000014 -
Vvi1g0565 616 Gene3D - 507 614 IPR015915 GO:0005515
Vvi1g0565 616 Gene3D - 273 506 IPR015915 GO:0005515
Vvi1g0565 616 Pfam Galactose oxidase, central domain 297 347 - -
Vvi1g0565 616 Pfam Kelch motif 521 568 IPR011498 GO:0005515
Vvi1g0565 616 Gene3D PAS domain 40 165 - -
Vvi1g0565 616 CDD F-box_AtADO-like 202 248 - -
Vvi1g0565 616 FunFam Putative LOV domain-containing protein 274 479 - -
Vvi1g0565 616 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 36 610 - -
Vvi1g0565 616 Pfam F-box domain 203 240 IPR001810 GO:0005515
Vvi1g0565 616 CDD PAS 44 153 IPR000014 -
Vvi1g0565 616 FunFam Adagio protein 1 36 165 - -
Vvi1g0565 616 Pfam Galactose oxidase, central domain 411 462 - -
Vvi1g0565 616 Pfam Galactose oxidase, central domain 362 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0565 Vvi-Chr1 5581599 5585315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0565 42 155 AGC Kinase Gene Family AT5G58140 44.737 9.25e-22 98.2