Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0560 ATGTCTGAGACCTCCACGACCACCGGCACAACTGCGCCCCTGCTCCGACCACGTCAGGGCACCGCCGAGCAGTCCGCCAGGCCTACTACGCTCGCGCTTCTCATGGGTCGGGCCACGGGCAGGCGGGGTCCCTCGATGCTGGTCAGGGAGACGGCGGCGCGTGAGCTGGAGGAACGGCGTGCCGACTGGGGTTACTCCAAGCCGGTGGTGGCTCTGGACATGATGTGGAACATGTCCTTCGTGATCGTTTCGATTGTCATGCTGATTTGCACGGCGCGTGAGAGGCCCAACACCCCGATTCGGCTCTGGATCTGCGGCTACGCGTTGCAGTGCGGGGTGCATGTGGTGCTGGTGTGGCTCGAGTACCGGAGGAGGAATAGGCGGCGGGTTCGCGATGAGGAACAGCAGCAGCAGCCGCAGCACTCAGATTCCGATGTCAATGATAGCGAGGACGAGGATGGAAATTCGAGCGCTTCGGGGGGTTTCAATCAGTCGAGTGTCACCAAACGGTGTGAATCAGTGAATACAATGGCATCATTTCTCTGGTGGATCGTTGGCTTCTATTGGGTGGTCTCTGGTGGTGAAGCCCTCCTGCAAAATGCTCCTCGTCTCTACTGGTTGGCTGTGGTATTTCTGGCATTTGATGTATTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGGATTGCTCTTTGCTGCTGTTTGCCTTGCATTATTGCAATTCTTTATGCTGTTGCTGGCCAGGAAGGTGCATCTGAGGCAGATCTCAGTATGCTTCCAAGATACAGGTTTGAAGCGAACAATGAAGAAAAGTCTGGTGTAGGAGCAGGCACAATGATTCCCACAGAAACGAGCAGTGGATACTTGGCAAATGAACGCATTCTTTTACCTGAGGATGCGGAATGCTGTATATGTCTCAGCTCATATGAGGATGGAGCAGAGCTGCATGCACTCCCCTGCAACCACCATTTCCATTCTACATGCATTGCGAAATGGCTCAAGATGAATGCAACATGCCCACTCTGTAAGTACAATATCCTCAAAGGAAGTGAACAGATTTGA 1068 0.5346 MSETSTTTGTTAPLLRPRQGTAEQSARPTTLALLMGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDMMWNMSFVIVSIVMLICTARERPNTPIRLWICGYALQCGVHVVLVWLEYRRRNRRRVRDEEQQQQPQHSDSDVNDSEDEDGNSSASGGFNQSSVTKRCESVNTMASFLWWIVGFYWVVSGGEALLQNAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSMLPRYRFEANNEEKSGVGAGTMIPTETSSGYLANERILLPEDAECCICLSSYEDGAELHALPCNHHFHSTCIAKWLKMNATCPLCKYNILKGSEQI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0560 355 MobiDBLite consensus disorder prediction 130 165 - -
Vvi1g0560 355 SMART ring_2 304 344 IPR001841 -
Vvi1g0560 355 SUPERFAMILY RING/U-box 292 349 - -
Vvi1g0560 355 CDD RING-H2_PA-TM-RING 303 345 - -
Vvi1g0560 355 MobiDBLite consensus disorder prediction 1 27 - -
Vvi1g0560 355 PANTHER TARGET OF ERK KINASE MPK-1 38 350 - -
Vvi1g0560 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 352 IPR013083 -
Vvi1g0560 355 FunFam E3 ubiquitin protein ligase RIE1 284 352 - -
Vvi1g0560 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Vvi1g0560 355 Pfam Ring finger domain 303 345 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0560 Vvi-Chr1 5486499 5492941 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0560 3 354 C3H Transcription Factor Family AT1G68070 67.797 1.73e-177 494