Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0559 ATGTCTGTCTCCTCCGCCCTCAACGCGTTCAAGTCCTCAGCGCTCATATCATGGAAATCTCTTGGGAAGCTCCAGCAAACCATAGCGGGGTGTATTGAGAGGTCTGGCATCACTTTACACTCCGGCAGGGTTGCCAGGGTGAAGATATGGCCGGAGTGTGCTGGAGTTGGGAGATACTTCGACTTTCGATCCAATTTTATTCACCCTTCAGTCGATTACGTTCAGGAATCGCCTCTCTGCACCACGCTCTGCAAAGACGGCTACAAGGTTCGAACTGTCGAGCACTTGCTTTCGGCTTTGGAGGCAATGGGCGTCGATAATTGCAGAATCGAGGTGGAAGGTTTGAACGGAGAAGAGTCAAGTGTGGAGGTTCCTATTTTTGATGGGTCAGCAAAGGAATGGGTGGAAGCAATAGAGCAGGTTGGATTAAAGGTGGCAACAGATCAGGGTGGCAACAGTTGTGAGAAAATGATACCGTTTCTTATTGAACCTGTGCATGTGCATAGGAATGATTCTTTTATAGCAGCTTTCCCCTATCCCAAAGTTCAGATCATTTATGGAATTGATTTTCCACAGGTGCCTGCTATTGGTTGCCAGTGGTTCTCTTCAGCCTCTTTGGATGACTCTTTCTACACCAGTGAAATAGGTCCTTCAAGAACCTTTTGTGTTTATGAAGAGGTGGAGAAACTACGTAACTTGGGACTCATTAAAGGTGGCTCAACAGATAGTGCCATTGTTTGTAGTGCCAGTAAAGGTTGGCTGAATCCACCACTGCGTTTCCCTGACGAACCTTGTCGCCATAAGGTTTTAGATCTTATTGGTGACCTTTCCCTTTTTGCACGGCATGGTAGTCAAGGGTTTCCAGTGGCACAGATAGTTGGTTACAAGGGAGGCCATGCACTGCATGCAGATTTTGTACGGCGTCTGTCAGGAATCAGTTAA 942 0.4724 MSVSSALNAFKSSALISWKSLGKLQQTIAGCIERSGITLHSGRVARVKIWPECAGVGRYFDFRSNFIHPSVDYVQESPLCTTLCKDGYKVRTVEHLLSALEAMGVDNCRIEVEGLNGEESSVEVPIFDGSAKEWVEAIEQVGLKVATDQGGNSCEKMIPFLIEPVHVHRNDSFIAAFPYPKVQIIYGIDFPQVPAIGCQWFSSASLDDSFYTSEIGPSRTFCVYEEVEKLRNLGLIKGGSTDSAIVCSASKGWLNPPLRFPDEPCRHKVLDLIGDLSLFARHGSQGFPVAQIVGYKGGHALHADFVRRLSGIS* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0559 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 163 309 IPR020568 -
Vvi1g0559 313 SUPERFAMILY Ribosomal protein S5 domain 2-like 24 144 IPR020568 -
Vvi1g0559 313 Gene3D lpxc deacetylase, domain 2 161 312 IPR011334 GO:0008759|GO:0009245
Vvi1g0559 313 NCBIfam UDP-3-O-acyl-N-acetylglucosamine deacetylase 25 308 IPR004463 GO:0008759|GO:0009245
Vvi1g0559 313 Gene3D lpxc deacetylase, domain 1 23 149 IPR015870 GO:0008759|GO:0009245
Vvi1g0559 313 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 4 311 IPR004463 GO:0008759|GO:0009245
Vvi1g0559 313 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 25 309 IPR004463 GO:0008759|GO:0009245
Vvi1g0559 313 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 23 313 IPR004463 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0559 12 310 Carbohydrate Esterase AT1G25054 61.204 1.26e-136 388