Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0558 ATGGATACTTGGGAATTGCCTCCTGTGCTTATTGAAAGATATAATGCAGCTGGTGGGGAAGGGACTGCTCTATGTGGAGTGTTTCCTGAGATACGCAGGGCATGGGCTTCAGTCGACAACTCTTTGTTTCTTTGGCGTTTTGATAAGTGGGATGGCCAGTGTCCTGAATACAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGCCTTGCCAAATCTAAACCTGGAGTTTTTGTGGAAGCTATCCAATATCTTTTGGTGTTAGCAACTCCTGTTGAGTTGATTCTTGTAGGTGTTTGCTGCTGCGGAAGGGGTGATGGAACAGATCCATATGAGGAGGTTTCACTGCAACTTCTGCCAGAATATACAATACCATCCGATGGGGTCACCATGACTTGCATCACTTGTACTGACAAGGGTCGCATTTTCCTGGCTGGACGTGATGGCCACATTTATGAGATGCATTACACAACTGGTTCAGGCTGGAATAAGCGTTGTCGTAAAGTTTGCCTCACTGTGGGATTGGGAAGTGTCATTTCAAGGTGGATTGTGCCAACTGTATTCAAGTTTGGAGCTGTTGACCCCATTGTTGAAATGGTTGTTGATAATGAAAGACACATTCTTTATGCACGAACAGAAGAGATGAAACTTCAAGTTTTTGTTCTGGGCCCAAAAGGAGATGGTCCCCTTAAGAAGGTGGCAGAAGAAAGGAGTTTGATCAATCAGAAGGATGCACATTATGGTGGCAGACAATCAGCAGGATCAAGACCCTCAAATCGATCAGTAAAGCCTTCTATAATTTGCATTTCTCCTTTGTCTACACTGGAATCAAAATGGCTACACCTAGTTGCTGTTTTATCCGATGGAAGAAGGATGTACCTCTCCACTGCTCCATCTAGTGGAAACAGTGGTGCTGTTGGAGGTTTAAGTGGATTTAATACTAGCCATCATAAGCCAAACTGTTTAAAAGTAGTAACAACTAGGCCCTCTCCTCCTTTGGGAGTTACTGGTGGACTTGCCTTTGGAGCCATATCTCTTTCTAGTAGAACTCAAAATGAGGATCTTGCACTGAAGGTTGAGTCAGCATATTATTCAGCAGGAGCTCTTGTCCTTTCTGATTCATCACCGCCAACCATGTCTTCTCTTCTTATTGTGGGCAGGGATTCAAGCACACAATCATCAGTGTCAGGTGGTTTAGGGACAACTGCAAGGACTTCTCGGGCATTGAGAGAATCTGTATCTTCCCTACCTGTTGAAGGCCGAATGCTTTTTGTGGCTGATGTTCTACCATCACCAGATATAGCAGCCACAGTGCAGTCACTTTATTCAGAATTGGAATTCTCTGGATTTGAAAGTTCAGGGGAATCCTGTGAAAAGGCATGTGGAAAACTTTGGGCTAGAGGAGACCTATCAACCCAACATATATTACCAAGGAGGAGAATCGTGGTATTCAGTACAATGGGGATGATGGAAGTAGTTTTTAACCGGCCAGTGGATATTCTTAGAAGGTTGTTAGAATCTAACTCACCAAGATCATTGTTAGAAGATTTTTTTAACCGTTTTGGAGCTGGAGAGGCAGCTGCTATGTGTTTAATGCTAGCTGCAAAGATAGTCCACACGGAAAATCTCATAAGCAATGTTGTCTCTGAGAAGGCAGCTGAAGCCTTTGAGGATCCAAGAGTTGTTGGAATGCCACAACTTGAAGGTAGTAGTGCATTTTCAAACACTAGAACGGCAGCTGGGGGGTTCAGTATGGGACAGGTTGTTCAAGAAGCTGAGCCCATCTTTTCTGGTGCGCATGAAGGACTGTGCTTGTGCTCATCAAGGTTGCTTCTTCCTGTGTGGGAACTTCCTGTTATGGTCATGAAAGGTGGTTTAGACACTTCCAATGCTATGTCTGAAAGTGGGATAGTTTCATGCAGACTCTCCAGTGGGGCAATGCAAGTCCTTGAAAACAAGATTCGCGCCTTGGAGAAGTTTCTAAGGTCTAGGAGGAACCAGAGAAGAGGACTCTATGGTTGTGTTGCTGGTCTAGGGGACTTGACTGGATCTATTCTCTATGGAACCGGTTCAGACTTGGGTGCTGGTGACAATAGTATGGTTAGAAACTTATTTGGTGCTTACTCTCGGAGTATTGAACCTGGAGATGGAGGAACATCAAATAAAAGGCAGCGGCTTCCATATAGTCCTGCAGAACTGGCTGCTATGGAGGTGAGAGCCATGGAATGTATCAGGCAGTTGCTTCTTAGATCTGCTGAAGCTCTGTTTTTGCTCCAACAACTTTGTCAGCATCATGTAACACGCTTGGTTCAGGGTTTTGATGTTAATCTACGACAAGAATTAGTTCAATTAACATTTCACCAACTTGTTTGTTCTGAGGAGGGTGATCGGCTGGCTACAAGGCTTATATCTTCTCTGATGGAGTATTACACTGGTCCTGATGGCAGGGGAACAGTTGACGATATTAGTGCAAGATTGCGAGAGGGTTGTCCAAGCTATTACAAGGAGTCTGATTACAAATTTTACTTAGCTGTGGAGTTTCTTGAGAGAGCTGCTGTGACTTCTGACACTGAAGAGAAGGAAAATCTTGCTAGAGAGGCCTTCAATTTCTTGAGTAAAGTTCCAGAGTCTGCAGATCTGCGAACTGTTTGCAAAAGATTTGAGGACTTGAGATTTTATGAAGCTGTGGTTCGCTTACCACTGCAAAAGGCACAAGCTCTTGACCCTGCAGGTGATGCTTTCAATGAGCAACTTGATGCAGGAACTCGGGAACATGCACTTGCTCAGCTTGAACAGTGCTATGAGATTATCACCAGTGCTTTGCGTTCTCTAAAGGGTGAGGCTTCCCAGAAGGAATTTGGATCTCCTGTGAGGCCTGCTGCTCGATCCACCCTTGATCAGGCTTCTCGAGACAAATACATACGCCAAATTGTTCAGCTTGGTGTTCAATCATCTGACAGAGTCTTTCATGAGTACTTGTACCGCACTATGATCGATTTGGGCCTTGAAAATGAGCTTTTAGAATATGGAGGTCCTGATCTGGTGCCTTTTCTGCAGAATGCTGGTCGTGAATCTTTGCAAGAGGTTCGGGCTGTTTCTTCTATAACATCAACAAGGTCTCCAGTGGGTCTATTTGGAGCACCTATTCCATCCAATCAAACCAAGTATTTTGATCTTTTGGCACGGTATTATGTCTTGAAGAGGCAACATGTACTTGCAGCTCATGTATTACTAAGACTGGCAGAGAGGCGCTCAACGGATGCAGGAGATGTCCCTACTTTAGAGCAGAGGCGCCAGTACCTGAGTAATGCAGTTCTGCAGGCAAAGAATGCAAGCAATAGTGACGGTCTAGTAGGTTCTGTCCGGGGTGCCTCTGACAATGGACTGCTGGATTTGCTTGAAGGGAAGCTTGCTGTTCTCCGGTTTCAAATAAAGATCAAAGGGGAACTGGAGGCTATAGCTTCCAGATTAGAATCTTCCAATGTTACATCTGAATCTGTCCTGAATGAATCATGCTCTGAGAGCAACCTGAATGCTGATACCAATTTTGCAAACACTGTACAAGAAAAGGCCAGAGAGATATCACTGGATTTGAAGAGTATTACTCAACTATATAATGAATATGCTGTTCCATTTGAGCTTTGGGAGATATGCCTGGAAATGCTGTATTTTGCTAACTATTCTGGTGATGCTGATAGTAGCATTGTAAGAGAAACCTGGGCTAGACTTATTGATCAAGCTCTTTCAAAAGGCGGCATTGCTGAAGCTTGTTCAGTCCTGAAGAGGGTTGGTTCTCACATTTATCCTGGAGATGGAGCTGTTTTACCTTTGGACACATTATGTCTCCACCTTGAGAAGGCTGCATTGGAGCGGTTAGCTTCTGGGGTTGAACCTGTTGGAGATGAAGATGTTGTGAGAGCTCTTCTCGCTGCTTGCAAGGGTGCAACTGAACCTGTATTAAACACTTATGAACAATTGTTATCAAATGGAGCTATTTTGCCATCGCCAAACCTGAGGTTGCGCCTTCTCCGTTCAGTTCTTGTGGTTCTTCGTGAATGGGCAATGTCTGTATTTGCACAGAGAATGGGCACAAGTGCTACTGGAGCTTCTCTAATTTTAGGTGGTGCATTTTCTTTGGAGCAAACAACTGTCATTAACCAAGGGGTTCGAGATAAAATCACAAGTGCTGCAAACAGGTATATGACCGAGGTGCGGAGGCTAGCCCTTCCACAGAGCCAGACCGAGGCTGTCTACCGTGGCTTCCGAGAGCTGGAGGAGTCCCTAATAAGTCCTTTTTCTTTTGAGCTGTACTGA 4311 0.4465 MDTWELPPVLIERYNAAGGEGTALCGVFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLVLATPVELILVGVCCCGRGDGTDPYEEVSLQLLPEYTIPSDGVTMTCITCTDKGRIFLAGRDGHIYEMHYTTGSGWNKRCRKVCLTVGLGSVISRWIVPTVFKFGAVDPIVEMVVDNERHILYARTEEMKLQVFVLGPKGDGPLKKVAEERSLINQKDAHYGGRQSAGSRPSNRSVKPSIICISPLSTLESKWLHLVAVLSDGRRMYLSTAPSSGNSGAVGGLSGFNTSHHKPNCLKVVTTRPSPPLGVTGGLAFGAISLSSRTQNEDLALKVESAYYSAGALVLSDSSPPTMSSLLIVGRDSSTQSSVSGGLGTTARTSRALRESVSSLPVEGRMLFVADVLPSPDIAATVQSLYSELEFSGFESSGESCEKACGKLWARGDLSTQHILPRRRIVVFSTMGMMEVVFNRPVDILRRLLESNSPRSLLEDFFNRFGAGEAAAMCLMLAAKIVHTENLISNVVSEKAAEAFEDPRVVGMPQLEGSSAFSNTRTAAGGFSMGQVVQEAEPIFSGAHEGLCLCSSRLLLPVWELPVMVMKGGLDTSNAMSESGIVSCRLSSGAMQVLENKIRALEKFLRSRRNQRRGLYGCVAGLGDLTGSILYGTGSDLGAGDNSMVRNLFGAYSRSIEPGDGGTSNKRQRLPYSPAELAAMEVRAMECIRQLLLRSAEALFLLQQLCQHHVTRLVQGFDVNLRQELVQLTFHQLVCSEEGDRLATRLISSLMEYYTGPDGRGTVDDISARLREGCPSYYKESDYKFYLAVEFLERAAVTSDTEEKENLAREAFNFLSKVPESADLRTVCKRFEDLRFYEAVVRLPLQKAQALDPAGDAFNEQLDAGTREHALAQLEQCYEIITSALRSLKGEASQKEFGSPVRPAARSTLDQASRDKYIRQIVQLGVQSSDRVFHEYLYRTMIDLGLENELLEYGGPDLVPFLQNAGRESLQEVRAVSSITSTRSPVGLFGAPIPSNQTKYFDLLARYYVLKRQHVLAAHVLLRLAERRSTDAGDVPTLEQRRQYLSNAVLQAKNASNSDGLVGSVRGASDNGLLDLLEGKLAVLRFQIKIKGELEAIASRLESSNVTSESVLNESCSESNLNADTNFANTVQEKAREISLDLKSITQLYNEYAVPFELWEICLEMLYFANYSGDADSSIVRETWARLIDQALSKGGIAEACSVLKRVGSHIYPGDGAVLPLDTLCLHLEKAALERLASGVEPVGDEDVVRALLAACKGATEPVLNTYEQLLSNGAILPSPNLRLRLLRSVLVVLREWAMSVFAQRMGTSATGASLILGGAFSLEQTTVINQGVRDKITSAANRYMTEVRRLALPQSQTEAVYRGFRELEESLISPFSFELY* 1437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0558 1436 Coils Coil 646 666 - -
Vvi1g0558 1436 FunFam Nuclear pore complex protein NUP155 1002 1104 - -
Vvi1g0558 1436 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1431 IPR004870 GO:0005643|GO:0006913|GO:0017056
Vvi1g0558 1436 FunFam Nuclear pore complex protein NUP155 840 999 - -
Vvi1g0558 1436 Gene3D - 477 829 - -
Vvi1g0558 1436 Gene3D Nucleoporin, helical domain, central subdomain 1002 1104 IPR042537 -
Vvi1g0558 1436 Gene3D - 840 999 IPR042533 -
Vvi1g0558 1436 Gene3D - 1131 1384 IPR042538 -
Vvi1g0558 1436 FunFam Nuclear pore complex protein NUP155 1130 1366 - -
Vvi1g0558 1436 Pfam Nup133 N terminal like 5 489 IPR014908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0558 Vvi-Chr1 5437188 5453319 Dispersed