Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0556 ATGGACGCGCTCTCTGTAATCCCCGCCGCCGTTCTTCGAAATCTATCTGACAAGCTATACGAGAAGCGGAAGAATGCGGCTCTCGAGGTGGAAGGAATCGTGAAGACGCTTGCGGCCGCCGGAGATCATGATAAGATTACGGCGGTGATTAACTTGCTGACCACGGAATACACCTTCTCCCCGCAGGCCAATCACCGCAAGGGAGGATTGATAGGCTTGGCTGCTGCAACGGTCGGTTTGACTTCGGAAGCCTCACAGCACCTTGAGCAAATTGTACCACCTGTGCTTAATTCTTTTGCTGATCAAGACAGCAGAGTTCGTTATTATGCTTGTGAAGCTCTCTATAACATTGCAAAGGTTGTAAGAGGAGATTTTATTGTATTTTTTAATCAAATTTTTGATGCCTTATGTAAGCTTTCAGCAGACTCAGATGCCAATGTGCAAAGTGCTGCTCATCTTTTAGATCGGCTTGTTAAGGACATTGTTACTGAAAGTGATCAATTCAGCATTGAAGAATTTATACCATTATTGAGAGAGCGTATGAATGTCCTAAATCCATATGTCCGCCAATTTTTGGTTGGATGGATCACTGTGTTGGACAGTGTTCCAGATATTGATATGCTGGGTTTTCTTCCTGATTTTCTTGATGGTTTGTTTAATATGTTAAGTGATTCTAGCCATGAAATACGGCAACAAGCTGATTCAGCACTTTCAGAGTTTCTCCAAGAGATCAAGAATTCCCCATCTGTAGATTATGGTCGCATGGCTGAAATTCTGGTACAGAGGGCTGCTTCTCCAGATGAATTTACTCGGCTGACAGCAATTACATGGATCTATGAGTTTGTAAAACTCGGAGGTGACCAGCTTGTTCCTTATTATGCTGATATTTTAGGCGCAATTTTGCCTTGCATATCTGATAAAGAAGAGAAAATAAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTACGTGCAATCCAGGTTGTTCCAGCTGAAGGTTTTGATGTAGGAGCGATCCTCTCTATTGCAAGGAGGCAATTATCTAGTGAATGGGAGTCTACCCGGGTTGAAGCATTGCACTGGATTTCAACACTTCTAAACAGACATCGTGCTGAGGTTTTAAACTTTCTGAATGACATATTTGACACCCTTTTGAAAGCTCTTTCAGATCCTTCTGATGAGGTAGTGCTTCTGGTACTTGACGTGCATGCATGCATAGCAAAAGATCCACAACACTTTCGCCATCTTGTAGTTTTCCTCGTGCATAATTTCCGGGTTGATAATTCCCTTTTGGAGAAGAGAGGTGCTTTGATAATCCGCCGACTTTGTGTACTTTTGGATGCTGAAAGAGTCTATCGTGAACTCTCAATGATACTAGAGGGAGAAGCTGATCTGGATTTTGCATCAATCATGGTTCAGGCTTTGAACTTGATTTTACTTACATCCTCTGAGTTGGCTGGGCTACGATCTCTTCTAAAACAATCACTAGTGAATCCCACTGGGAAAGATTTGTTTGTTTCTTTGTATGCTTCCTGGTGCCATTCGCCAATGGCAATAATAAGTCTTTGCTTATTAGCTCAGACATACCAACATGCAAGTTCTGTGATCCTGTCTCTGGTGGAGGAAGATATAAATGTGAAATTCTTGGTCCAACTAGATAAACTGGTTCGCTTGCTGGAGACTCCAATCTTTGCTTATCTTAGATTGCAGCTTCTTGAACCAGGAAGGTATATATGGTTGTTAAAAGTGTTGTATGGTCTTCTGATGTTGCTTCCTCAGCAAAGTGCTGCCTTCAAGATACTACGGACTCGATTGAAAACAGTGCCTCCATCTTCCTTTAGCGGTGAGCAAATGAAGCAAACATCTTCAGGGAATCCTTATTCACAAATTCTACATCACATGCCAAGTGGATCACAAGTTATAGAGGATGGTGATGTGAACCACGATGCAAATGTGCATAATGGAATTAATTTCGCCTCAAGGCTACAACAATTTGAACATATGCAGCACCAGCACCGTATGCATTCAAAATCATCACAGGCTCAGTCTCGCAACAATTCCACTTCATATTCATCATCAAAGGAGGTGCAAAGACCAGAAGAAGCACGGCGACCTATGCCCACTTCAGAAATGAATAAACCTCCCTCAAGATCATCAAGAAGAGGCCCAGGACAGCTTCAGGTTTGA 2184 0.4263 MDALSVIPAAVLRNLSDKLYEKRKNAALEVEGIVKTLAAAGDHDKITAVINLLTTEYTFSPQANHRKGGLIGLAAATVGLTSEASQHLEQIVPPVLNSFADQDSRVRYYACEALYNIAKVVRGDFIVFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWIYEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIQVVPAEGFDVGAILSIARRQLSSEWESTRVEALHWISTLLNRHRAEVLNFLNDIFDTLLKALSDPSDEVVLLVLDVHACIAKDPQHFRHLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSMILEGEADLDFASIMVQALNLILLTSSELAGLRSLLKQSLVNPTGKDLFVSLYASWCHSPMAIISLCLLAQTYQHASSVILSLVEEDINVKFLVQLDKLVRLLETPIFAYLRLQLLEPGRYIWLLKVLYGLLMLLPQQSAAFKILRTRLKTVPPSSFSGEQMKQTSSGNPYSQILHHMPSGSQVIEDGDVNHDANVHNGINFASRLQQFEHMQHQHRMHSKSSQAQSRNNSTSYSSSKEVQRPEEARRPMPTSEMNKPPSRSSRRGPGQLQV* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0556 727 MobiDBLite consensus disorder prediction 710 727 - -
Vvi1g0556 727 Pfam Vacuolar 14 Fab1-binding region 64 160 - -
Vvi1g0556 727 Pfam Vacuolar protein 14 C-terminal Fig4p binding 428 607 IPR021841 -
Vvi1g0556 727 MobiDBLite consensus disorder prediction 666 727 - -
Vvi1g0556 727 FunFam ARM repeat superfamily protein 5 124 - -
Vvi1g0556 727 FunFam protein VAC14 homolog isoform X1 248 409 - -
Vvi1g0556 727 SUPERFAMILY ARM repeat 6 539 IPR016024 -
Vvi1g0556 727 PANTHER TAX1 BINDING PROTEIN-RELATED 6 694 IPR026825 GO:0006661|GO:0070772
Vvi1g0556 727 FunFam protein VAC14 homolog 125 247 - -
Vvi1g0556 727 Gene3D - 248 408 IPR011989 -
Vvi1g0556 727 MobiDBLite consensus disorder prediction 674 694 - -
Vvi1g0556 727 Gene3D - 1 247 IPR011989 -
Vvi1g0556 727 ProSiteProfiles HEAT repeat profile. 91 126 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0556 Vvi-Chr1 5414748 5433793 Dispersed