Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0555 ATGGACTTAATGTCACTGCGCTTCATCTCCAATCAATCTCTGTTCGCCGCCGTCCGATCCGGCGACTTGGAATCGCTGAAGCAGATCATCCACAAATTGACAGAAGAGGAGCCGTCTGTTCGAGCTTCGATCTTGGCTCTGATGGCCGTGAAGAACGACGCCGACGAAACGGCTCTCTACATCGCCGCCGATAATAACCTCCATGAGATCTTCACTTACTTGCTCCAGTTCTGTGATCTCCAGACTGTTATGATTAGGTCCAAGTCCGGCATGGATGCCTTCCACGTCGCCGCTAAGCGTGGCCACTTAGGGATTGTGAAGGAACTTTTGGATTTGTGGCCTGAGCTTTGCAAGTCATGTGACTCCACAAACACAAGTCCCCTTTATTCAGCTGCTGTTCAGGACCATTTGGATGTAGTGACTGCCATCTTAGATGCAGATGTCAGCTCAATAAGGATAGTAAGGAAAAATGGAAAAACTTCATTGCACACAGCTGCTAGGTATGGCCTTCTTCGTATGGTAAAAGTTCTTATAGAGAGAGATGCTGGCATTGTTTGCATCAAAGATAAGAAGGGCCAAACCGCACTCCATATGGCTGTAAAAGGTCAGTGTCCTGATGTAGTAGATGAGTTACTGGCAGCTGATCACTCAATACTTAATGAACGTGACAAAAAGGGTAATACAGCTGTGCATATAGCCACAAGGAAATGCCGACCACAGATAGTAAGCCTTTTGCTAAGCTATAGATCAGTTGATGTCAACGTCATCAATAATCAGAAAGAAACTGCAATGGATTTGGTGGATAAACTTCAATATGGAGAATCCAAATTGGAAATTAAGGACGCTCTTGCAGAGTCAGGTGCCAAGCATGCCAGATATGTTGGTCAAGAGGATGAAACAATGGAACTGAAAAGGACTGTGAGTGATATAAAGCATGAGGTGCATTCACAACTCATACAGAATGAAAAAACCCAGAGACGAGTTTCCGGCATTGCCAAAGAGCTAAGGAAACTTCACAGAGAAGCTGTCCAAAACACTACCAATTCTGTGACAGTTGTTGCCGTTCTTTTTGCCTCCACTGCTTTCCTAGCCATATTCAACTTGCCTGGCCAATATATAATGGGTGGACCCGAAGTAGGGAAAGCTAGGATAGCTGACAATGTAGGGTTCCAAGTTTTCTGCCTCTTGAATGCTACATCTCTCTTCATATCTCTTGCTGTTGTTGTGGTTCAGATCACTTTGGTGGCCTGGGACACTAGAGCTCAGAAACAGGTTGTTTCAGTGGTTAACAAGCTGATGTGGGCTGCCTGCATTAGCACAGGCGCGGCTTTCCTGTCAATAGCCTTTGTGGTCGTGGGCCAGGGAGGCTCATGGATGTCTATCACCATAACCCTAATAGGAACGCCCATTCTTGTTGGGACTCTTGCTTTCATGGCCTACTTTGTTTTCCGGCAGCATTTTGGCATTTTCGGCAATGATTCTCAGAGACGGATCAGAAGGGCAACTGGAAGCAAATCTTTCTCATGGTCTATGTACTCGGCCAATATTTCAGATTTGGAAGACTATAATTCTGACCGTGAGAAGATCTACGCATTGTAA 1599 0.4553 MDLMSLRFISNQSLFAAVRSGDLESLKQIIHKLTEEEPSVRASILALMAVKNDADETALYIAADNNLHEIFTYLLQFCDLQTVMIRSKSGMDAFHVAAKRGHLGIVKELLDLWPELCKSCDSTNTSPLYSAAVQDHLDVVTAILDADVSSIRIVRKNGKTSLHTAARYGLLRMVKVLIERDAGIVCIKDKKGQTALHMAVKGQCPDVVDELLAADHSILNERDKKGNTAVHIATRKCRPQIVSLLLSYRSVDVNVINNQKETAMDLVDKLQYGESKLEIKDALAESGAKHARYVGQEDETMELKRTVSDIKHEVHSQLIQNEKTQRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASTAFLAIFNLPGQYIMGGPEVGKARIADNVGFQVFCLLNATSLFISLAVVVVQITLVAWDTRAQKQVVSVVNKLMWAACISTGAAFLSIAFVVVGQGGSWMSITITLIGTPILVGTLAFMAYFVFRQHFGIFGNDSQRRIRRATGSKSFSWSMYSANISDLEDYNSDREKIYAL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0555 532 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 510 - -
Vvi1g0555 532 ProSiteProfiles Ankyrin repeat profile. 157 184 IPR002110 GO:0005515
Vvi1g0555 532 Pfam Domain of unknown function 341 450 IPR026961 -
Vvi1g0555 532 SMART ANK_2a 9 40 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 54 83 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 157 186 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 89 118 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 191 220 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 123 153 IPR002110 GO:0005515
Vvi1g0555 532 SMART ANK_2a 225 255 IPR002110 GO:0005515
Vvi1g0555 532 SUPERFAMILY Ankyrin repeat 14 270 IPR036770 -
Vvi1g0555 532 Gene3D - 5 112 IPR036770 -
Vvi1g0555 532 Coils Coil 321 341 - -
Vvi1g0555 532 Gene3D - 113 313 IPR036770 -
Vvi1g0555 532 Pfam Ankyrin repeats (3 copies) 15 111 IPR002110 GO:0005515
Vvi1g0555 532 Pfam Ankyrin repeats (3 copies) 119 182 IPR002110 GO:0005515
Vvi1g0555 532 Pfam Ankyrin repeats (3 copies) 189 255 IPR002110 GO:0005515
Vvi1g0555 532 ProSiteProfiles Ankyrin repeat region circular profile. 157 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0555 Vvi-Chr1 5403355 5412076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0555 1 532 Miscellaneous Gene Families AT2G01680 70.149 0.0 754