Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0554 ATGGCGGGCTTGGGTGCTTCCAAGATTCTAACCCAGTTCCGTCCTCTAACCTGCGCCGCCGCCACGGCCACGGCCACCGCGTGCCATCCGGGGCGGCTGGTGCCCCACCCACCTGATCTTATCAAATGGGTGAGGAGAGAAGGGGGTTTCGTTCACCAGGCAGTGACAATAGCTCCAAGTGCTGACTCCTGTGGCCTTGGATTGGTGGCTTCTCAAGATATCCCTAAAGGCTCTGACCTGATTGCCCTCCCTCACCACATTCCCCTGAGGTTTAGCTCTCTTGAATCCGAGGGTGTTGATACTATTGACTCCGTTTTGGTGAATTTGGCCCGTCAAGTTCCTGAGGAACTATGGGCTATGAGATTGGGTTTGAAGCTTTTGCAAGAAAGAGCATCAATTGGTTCCTTCTGGTGGGCATACATCAGCAATCTTCCAGAAACTTACAGTGTACCCATCTTCTTTCCTGGAGAGGATATAAAGAACTTGCAGTATGCTCCTCTGCTTTACCAGGTAAACAAGAGATGTCGGTTTCTTCTAGATTTTGAGAAAGAAGTCAAACGTGTACTGAAAAATCTGAAACCGGATGATCACCCTTTTAGGGGTCAAGATGTTGATGCATCTTCCCTTGGATGGGCAATGTCTGCAGTCTCATCCAGGGCATTCCGTTTGCACGGCAAGAAACTGTCAGATGGGACGCATGTTGATGTTCCTATGATGCTTCCTCTTATTGATATGTGCAACCACAGCTTCAATCCTAATGCCCAAATTGTTCAGGAACAAGATGCAGGGAGCACTAATATGTTAATAAAGGTTGTGGCGGAAACACAGATCAAACAAGATGATAATCTAGTACTCAACTATGGCTGTTTGAACAATGACTTTTTCCTTCTTGATTATGGATTTGTGATACCCTCAAATCCCTATGACTGTATTGAGCTCAAATATGATGGAGCCCTTCTGGATGCTGCAAGCATGGCTGCTGGGGTCATGTCCCCGAACTTCTCTTCACCAGCTCCCTGGCAACAGCAAATTCTTTCCCAGCTAAATTTAGATGGAGAAGCTCCTGTTCTCAAGGTAAACTTAGGAGGCTCAGAATTGGTAGAGGGCCGCCTGTTGGCTGCCTTAAGAGTACTTCTTGCCTCTGACTTGGAAACAGTACAGAAGCACGATTTGAATACACTTAAATCATTAGCAGCCGAAGCTCCTCTTGGGATATCAAACGAAGTGGCTGCTCTACGCACTGTTATTGCATTATGTGTGATTGCACTGGGACACTTCCCCACCAAAATAATGGAGGATGAAGCCCTTTTGAAACAAGGTGTTTCGGGTTCCGCTGAATTAGCTATCCAGTTTAGGATCCAAAAGAAATCAGTGATTATAGATGTGATGAGAGGTCTCACAAGCAGGGTGAAGTTACTCTCGTCAAAGGAAAAGATCAGTGCTCAAGGCTAA 1452 0.4669 MAGLGASKILTQFRPLTCAAATATATACHPGRLVPHPPDLIKWVRREGGFVHQAVTIAPSADSCGLGLVASQDIPKGSDLIALPHHIPLRFSSLESEGVDTIDSVLVNLARQVPEELWAMRLGLKLLQERASIGSFWWAYISNLPETYSVPIFFPGEDIKNLQYAPLLYQVNKRCRFLLDFEKEVKRVLKNLKPDDHPFRGQDVDASSLGWAMSAVSSRAFRLHGKKLSDGTHVDVPMMLPLIDMCNHSFNPNAQIVQEQDAGSTNMLIKVVAETQIKQDDNLVLNYGCLNNDFFLLDYGFVIPSNPYDCIELKYDGALLDAASMAAGVMSPNFSSPAPWQQQILSQLNLDGEAPVLKVNLGGSELVEGRLLAALRVLLASDLETVQKHDLNTLKSLAAEAPLGISNEVAALRTVIALCVIALGHFPTKIMEDEALLKQGVSGSAELAIQFRIQKKSVIIDVMRGLTSRVKLLSSKEKISAQG* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0554 483 Gene3D - 335 478 IPR036464 -
Vvi1g0554 483 Gene3D set domain protein methyltransferase, domain 1 15 301 - -
Vvi1g0554 483 FunFam SET domain containing protein 324 477 - -
Vvi1g0554 483 Pfam SET domain 65 288 IPR001214 GO:0005515
Vvi1g0554 483 Pfam Rubisco LSMT substrate-binding 336 458 IPR015353 -
Vvi1g0554 483 FunFam Histone-lysine N-methyltransferase setd3 2 301 - -
Vvi1g0554 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 298 478 IPR036464 -
Vvi1g0554 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 39 445 - -
Vvi1g0554 483 SMART set_7 53 294 IPR001214 GO:0005515
Vvi1g0554 483 ProSiteProfiles SET domain profile. 53 288 IPR001214 GO:0005515
Vvi1g0554 483 CDD SET_LSMT 54 302 - -
Vvi1g0554 483 SUPERFAMILY SET domain 35 306 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0554 Vvi-Chr1 5391143 5401602 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi1g0554 SET 5.5e-12 No_clan