Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0551 ATGGCAAGTGAGGGTGAAGGGGGGCGGACTGTGGATCTCATGCGCATCCTATTGACATATGGGCTTGACCCCATTACTGGTACAGTGGAGAACATGCTCTGTCGAAGCAAAACAATTGAAGAATCTGCAAGAAGGCTACTAAAAGCAATGGTGGAGTTTGGCTCCAAGGAATTTGATTCCCTTCTCCCAAATGCTACCTCATCCAAAAAGGTAGCATCACTGCAAGAGAGTCTGGCATCAGCCGAAAAAGGCCGAACTAATCTTCCAATTAAGCAAGGTGATTGGCTTTGCCCAAAATGCAACTTCCTAAATTTTGCTAGAAATATTAAGTGCTTGCGATGCAATGATATATCCCAAGAAAGACTAAGGAAACTATGGGAGGATCAAGATCATCTTCCATTGAAGAAGGGAGACTGGATATGTAACAAATGCAATTTCCTAAATTTTGCTAGGAATACGATATGTTTGCAATGTAAGGAGAAGCCTCCAAAGCGGGAACTCAATCCAGGGGATTGGGAATGTGATTCGTGTAACTTCATCAATTTTGGAAGAAACATGGTATGCTTGAAATGTGATCATAAACGGCCAAAGGCTTCTGCTCAACCTGGTCATGAAATTCAAGGATTTTCCTCCTATCATAAGGGGTCTAGGTTTGTTAAAGATGAAGATGAAACCAGTGGTGAGCTTCCTATCAGACAAGAGACGCAAAGTCCTAACAATGGTACAGCTAGGTGGAGATTTGTGGAGGATGAGAGTAAGGACATTGATGGTTCAAAATCATGGGATGGAATTTCTGGATTTGTAGATTTTCCCATTGCAGGGGGTAAAAGCGAATTGTCTCAGAATTCAAGTAAAAGATCAAAATGGAAAGCAGAGATGTTGGAGAAGAGCAGACCCCATTCAAGGGGAGGCGAATCTAGATCTGCCAGCCTCCAGAGAAGACCAGAGTTTGTTGAATGTAGCAGTGATGAGGAGATGGCTGAATGGTTTGGGCATGGAAAGAGGATGCAAATGGAGGAGTAA 1023 0.4301 MASEGEGGRTVDLMRILLTYGLDPITGTVENMLCRSKTIEESARRLLKAMVEFGSKEFDSLLPNATSSKKVASLQESLASAEKGRTNLPIKQGDWLCPKCNFLNFARNIKCLRCNDISQERLRKLWEDQDHLPLKKGDWICNKCNFLNFARNTICLQCKEKPPKRELNPGDWECDSCNFINFGRNMVCLKCDHKRPKASAQPGHEIQGFSSYHKGSRFVKDEDETSGELPIRQETQSPNNGTARWRFVEDESKDIDGSKSWDGISGFVDFPIAGGKSELSQNSSKRSKWKAEMLEKSRPHSRGGESRSASLQRRPEFVECSSDEEMAEWFGHGKRMQMEE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0551 340 MobiDBLite consensus disorder prediction 220 245 - -
Vvi1g0551 340 ProSiteProfiles Zinc finger RanBP2 type profile. 135 164 IPR001876 -
Vvi1g0551 340 PANTHER ZINC FINGER PROTEIN 2 116 - -
Vvi1g0551 340 ProSiteProfiles Zinc finger RanBP2 type profile. 168 197 IPR001876 -
Vvi1g0551 340 Gene3D - 128 163 - -
Vvi1g0551 340 Gene3D - 82 119 - -
Vvi1g0551 340 Gene3D - 164 198 - -
Vvi1g0551 340 MobiDBLite consensus disorder prediction 275 340 - -
Vvi1g0551 340 SMART zf_4 170 194 IPR001876 -
Vvi1g0551 340 SMART zf_4 93 117 IPR001876 -
Vvi1g0551 340 SMART zf_4 137 161 IPR001876 -
Vvi1g0551 340 Pfam Zn-finger in Ran binding protein and others 170 196 IPR001876 -
Vvi1g0551 340 Pfam Zn-finger in Ran binding protein and others 91 114 IPR001876 -
Vvi1g0551 340 Pfam Zn-finger in Ran binding protein and others 135 159 IPR001876 -
Vvi1g0551 340 ProSitePatterns Zinc finger RanBP2-type signature. 95 114 IPR001876 -
Vvi1g0551 340 SUPERFAMILY Ran binding protein zinc finger-like 84 117 IPR036443 -
Vvi1g0551 340 SUPERFAMILY Ran binding protein zinc finger-like 130 162 IPR036443 -
Vvi1g0551 340 MobiDBLite consensus disorder prediction 283 309 - -
Vvi1g0551 340 SUPERFAMILY Ran binding protein zinc finger-like 164 198 IPR036443 -
Vvi1g0551 340 ProSitePatterns Zinc finger RanBP2-type signature. 172 191 IPR001876 -
Vvi1g0551 340 ProSiteProfiles Zinc finger RanBP2 type profile. 91 120 IPR001876 -
Vvi1g0551 340 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0551 Vvi-Chr1 5369678 5371076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0551 166 203 EF-hand Containing Proteins AT1G55040 52.632 2.95e-08 53.5