Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g0549 | ATGGGTTCAGAAGGATCAGGGGTTGTGGTTCCAAGGAATTTCAGATTACTGGAAGAGCTTGAGAGAGGGGAAAAGGGAATTGGCGATGGAACTGTCAGTTATGGAATGGATGATGCTGATGATATATACATGCAGTCGTGGACTGGGACTATCATTGGTCCTCCTAATACCGTTCATGAAGGGCGCATCTACCAGTTGAAACTGTTCTGTGGTCAGGACTATCCGGATAATCCACCAACTGTGAAGTTCCAGACTCGGATAAATATGACCTGTGTCAATCAGGAAACTGGAGTGGTCGAACCTAGTCTTTTCCCCATGCTTGCTACTTGGCAGAGGGAGCATACAATGGAGGACATATTGACTCAATTGAAGAAAGAAATGATGTCTCCCCAGAATCGAAAGCTGGCTCAGCCTCCTGAAGGCAATGAAGAGGCGAGGATTGATCAAAAAGGGCTTGTCCTGAAGTGTTGTATTCTCTGA | 480 | 0.4604 | MGSEGSGVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPNTVHEGRIYQLKLFCGQDYPDNPPTVKFQTRINMTCVNQETGVVEPSLFPMLATWQREHTMEDILTQLKKEMMSPQNRKLAQPPEGNEEARIDQKGLVLKCCIL* | 160 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g0549 | 159 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 44 | 135 | - | - | |
| Vvi1g0549 | 159 | FunFam | Ubiquitin-conjugating enzyme E2 variant 1C | 2 | 144 | - | - | |
| Vvi1g0549 | 159 | SUPERFAMILY | UBC-like | 9 | 142 | IPR016135 | - | |
| Vvi1g0549 | 159 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 11 | 159 | IPR000608 | - | |
| Vvi1g0549 | 159 | Pfam | Ubiquitin-conjugating enzyme | 41 | 136 | IPR000608 | - | |
| Vvi1g0549 | 159 | SMART | ubc_7 | 14 | 158 | - | - | |
| Vvi1g0549 | 159 | Gene3D | Ubiquitin Conjugating Enzyme | 2 | 144 | IPR016135 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi1g0549 | Vvi-Chr1 | 5345277 | 5349940 | Transposed |