Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0546 ATGTCTGTAAGCGTTTCTCTTTGTCTCTCGTCTCTCTTGATTTTTCTCATCACCTTCTCAGCTCTGCCAAGCCCTTCAATCTCTGCCATAGACACCTTCATCTTTGGTGGGTGCGCTCAGATAAGGTACGTTCAGGGCTCACCCTACGAGTCCAACGTCAATTCTATTCTCACCTCCCTCGTCAACTCAGCCTCGGCTCCTGGCATCGCCGCCCTCTACAACAAGTACACCGTCCCTGGCCCCACCTCTCAGGACACCGTCTCCGGCCTCTACCAATGCAGAGGCGACCTCAACCCCGGCGACTGTGCTCGCTGCGTGGCTCGCTGCGTGTCTCAACTCGGAGCCCTCTGTCTTGACTCCTGCGGCGGCGCGTTGCAGCTCGAAGGATGCTTCGTCAAGTACGATAACGCCACCTTCCTAGGGGTGGAAGACAAGACGGTGGTGGTGAAGAAATGTGGGCCGTCGATTGGGTATGACTCCGACGCGTTGACCCGCCGCGATGCCGTGCTGGGCTACCTGGAGGGCGGGACCCAGACTTTTCGGGTCGGGGGGTCAGGGAACATCCAGGGTATGGCGCAGTGCGTAGGGGATCTGAGTGCGAGCGAGTGTCAGGATTGCGTGTCGGACGCCATCGGACGGCTGAGAAGCGAGTGTGGGACCTCTGCTTGGGGAGACATGTTCTTGGCCAAGTGCTACGCGCGGTTCTGGGAAGGTGGAGATCGATCGCACACTGCAAATGATGGGTATGGTTATGATCATCATGATCATGATAACGACAATGATGAAGACATCGAAAAGACATTAGCAATTCTCATCGGGCTTATAGCAGGGGTTGCGTTAATCATAGTTTTCCTTTCCTTCTTAAGAAAAGTGCTTGAAGGAAAAGATGGCAAATGA 897 0.5507 MSVSVSLCLSSLLIFLITFSALPSPSISAIDTFIFGGCAQIRYVQGSPYESNVNSILTSLVNSASAPGIAALYNKYTVPGPTSQDTVSGLYQCRGDLNPGDCARCVARCVSQLGALCLDSCGGALQLEGCFVKYDNATFLGVEDKTVVVKKCGPSIGYDSDALTRRDAVLGYLEGGTQTFRVGGSGNIQGMAQCVGDLSASECQDCVSDAIGRLRSECGTSAWGDMFLAKCYARFWEGGDRSHTANDGYGYDHHDHDNDNDEDIEKTLAILIGLIAGVALIIVFLSFLRKVLEGKDGK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0546 298 ProSiteProfiles Gnk2-homologous domain profile. 140 240 IPR002902 -
Vvi1g0546 298 ProSiteProfiles Gnk2-homologous domain profile. 31 139 IPR002902 -
Vvi1g0546 298 FunFam cysteine-rich repeat secretory protein 3 30 139 - -
Vvi1g0546 298 Gene3D - 163 237 IPR038408 -
Vvi1g0546 298 Gene3D - 30 139 IPR038408 -
Vvi1g0546 298 PANTHER ANTIFUNGAL PROTEIN GINKBILOBIN-2-LIKE 4 291 - -
Vvi1g0546 298 FunFam Cysteine-rich repeat secretory protein 60 160 238 - -
Vvi1g0546 298 Pfam Salt stress response/antifungal 42 136 IPR002902 -
Vvi1g0546 298 Pfam Salt stress response/antifungal 184 235 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0546 Vvi-Chr1 5321094 5323092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0546 43 285 Receptor kinase-like Gene Family AT4G21230 24.615 3.21e-14 70.9