Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0544 ATGTACTCTCACCTCTTCACACTGCTCCTCCTCTTCTTCTACTTCCCTCCCGCTAAACCTGACCTTTCTTCCGACAGAGCTGCCCTTCTCGCCTTCCGCGACTCCGTCCGCGGCAGCACCCTCATCTGGAACGGTACCGACACATGTTCCTGGGAAGGTATCCAGTGCGATGCTGACCGCGTTACCTCCCTACGCCTTCCCGCCGACGACCTCACAGGTAATATTCCCCCCAACACACTCGGTAACCTTACCCAACTCCGCGATCTCAGTCTACGGGGGAACTCCCTCACCGGTAACCTCCCCTCGGATTTGGGCTCCTGTACGCAACTCCAGCGGCTATTCTTGCAGGATAATCAGTTTTCTGGCCAGATACCGGCGGGACTCTTCCTGTTGAATAACCTTGTTCGCTTGGACTTGTCGAGAAATAATTTATCCGGCGAGATCTCGCAGGGGTTTGGGAATCTCACAAAGTTGAGAACTTTGTATTTGGAGAGAAACCAACTCAGCGGGTCTATTCCAGATTTGAACCTCGAGTTGCGCGACTTCAATGTTTCTTACAATAGATTGAGTGGCTCTATTCCAAAAGGTCTTAGAAATTTTGGCTCAGATGCATTTCAAGGGAATTCACTATGTGGTAGCCCCCTTGCGTCTTGCCCCGACAGTGGAAATAAGCTCTCCGGTGGAGCGATTGCTGGAATTGTCATTGCTTCCGTCATCGGTCTGGTTTTAATTATTATAGTTGTATTGATTTTTTTTAGAAAATATAGGAGGACGACAAGATCAGGGCCTGAATTTGAAATTCCTAGCAATCAACCAGTTGATATGGGAGAAAACGGTGGTGGGATAAATGGGTTTCCAGCAGAAAAGGCAGCAAATGGAGTTGAGAAAATTAGGAATGCTAATGGGTTGGTGTTTTTGGGGAATGGTTTAAGTGTATTTGATTTGGAGGAGCTGTTGAGAGCCTCAGCTGAGGTGTTGGGGAAGGGGACATGTGGTACTACTTATAAGGCTATGGTGGGGGAAGGGGTTGAAGTGGTTGTGAAGAGATTGAGAAATATATGTGTTTATGAGAGGGAGTTTCTGGAGGAGGTTGCAAGGTTAGGAGGGATGGTTCATGAAAATTTGGCATCTATCAGAGCATATTATTACGGCAGGGATGAGAAGCTTCTTATCTATGACTGCTTGCCCATGGGAAACTTGTCCTCACTTTTACATGGAGACAGAGGTGCATGGAGAGCTCCACTGAGTTGGGAAGTTAGGGGTAGAATTGCTTTAGGAGCTGCCCGTGGTATCAAATATCTACATTCTCATGGCCCCAATGTCTCCCATGGCAACATCAAGTCATCCAATATCCTGCTCACCAATTCCTGTGATGCTCTAGTTACAGAATTTGGCATAGTCCAACTGGTTTCCGTGACCTCAGCACCCAAACATTCAGGCTATTGTGCACCAGAGACCAGGGGTTCCTATACGGTTTCCCAAAAAGCCGATGTCTACAGTTTCGGTGTTGTGCTTTTGGAACTGCTGACAGCCAAAGCTCCCACCTATGCCCTTTCCAACGAGGAAGAGATGGAGCTTCCTAGGTGGGTGGAGTCTGTGGTTGAGGAAAGGGGGACGATTGATGTGTTTGATCTTGAGCTTCTTAGGTATGACAACATTGAGGAGCAAGTTGTTCAGCTGTTACATCTTGCTCTGCTTTGTACTTCTAAACACCCTAAAAGACGCCCCTCCATGGCTGAGGTGACAAGGCAGATTGAGCTGATTTTTGGGTCGGGGCTACCGGAGTATGAGCCACAGCCTAATCAGATTGAAGATGGATCATGA 1824 0.4792 MYSHLFTLLLLFFYFPPAKPDLSSDRAALLAFRDSVRGSTLIWNGTDTCSWEGIQCDADRVTSLRLPADDLTGNIPPNTLGNLTQLRDLSLRGNSLTGNLPSDLGSCTQLQRLFLQDNQFSGQIPAGLFLLNNLVRLDLSRNNLSGEISQGFGNLTKLRTLYLERNQLSGSIPDLNLELRDFNVSYNRLSGSIPKGLRNFGSDAFQGNSLCGSPLASCPDSGNKLSGGAIAGIVIASVIGLVLIIIVVLIFFRKYRRTTRSGPEFEIPSNQPVDMGENGGGINGFPAEKAANGVEKIRNANGLVFLGNGLSVFDLEELLRASAEVLGKGTCGTTYKAMVGEGVEVVVKRLRNICVYEREFLEEVARLGGMVHENLASIRAYYYGRDEKLLIYDCLPMGNLSSLLHGDRGAWRAPLSWEVRGRIALGAARGIKYLHSHGPNVSHGNIKSSNILLTNSCDALVTEFGIVQLVSVTSAPKHSGYCAPETRGSYTVSQKADVYSFGVVLLELLTAKAPTYALSNEEEMELPRWVESVVEERGTIDVFDLELLRYDNIEEQVVQLLHLALLCTSKHPKRRPSMAEVTRQIELIFGSGLPEYEPQPNQIEDGS* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0544 607 Pfam Leucine rich repeat 124 168 IPR001611 GO:0005515
Vvi1g0544 607 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Vvi1g0544 607 Pfam Leucine rich repeat N-terminal domain 23 57 IPR013210 -
Vvi1g0544 607 SUPERFAMILY Protein kinase-like (PK-like) 324 585 IPR011009 -
Vvi1g0544 607 FunFam Probable inactive receptor kinase RLK902 22 176 - -
Vvi1g0544 607 SUPERFAMILY L domain-like 24 202 - -
Vvi1g0544 607 Gene3D Ribonuclease Inhibitor 22 176 IPR032675 -
Vvi1g0544 607 Gene3D Ribonuclease Inhibitor 177 222 IPR032675 -
Vvi1g0544 607 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 395 592 - -
Vvi1g0544 607 Gene3D Transferase(Phosphotransferase) domain 1 395 591 - -
Vvi1g0544 607 Pfam Protein kinase domain 323 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0544 607 PANTHER OS05G0588300 PROTEIN 6 588 - -
Vvi1g0544 607 Gene3D Phosphorylase Kinase; domain 1 291 393 - -
Vvi1g0544 607 ProSiteProfiles Protein kinase domain profile. 320 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g0544 607 SMART LRR_typ_2 83 107 IPR003591 -
Vvi1g0544 607 SMART LRR_typ_2 131 154 IPR003591 -
Vvi1g0544 607 SMART LRR_typ_2 155 178 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0544 Vvi-Chr1 5301921 5304473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0544 21 586 Receptor kinase-like Gene Family AT1G48480 51.882 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi1g0544 Pkinase 8.8e-28 CL0016