Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0543 ATGGATGATATGAAGGACAAAGTCAAGGGTTTCATGAAGAAAGTCAACAGCCCCTTCTCCTCATCTTCCTCTGGTAAATTCAAGGGCCAAGGCAGAGTCTTGGGTTCATCTTCTTCAGGGCCCAGTAATCCCATCCATACCCGACCTTCTCTACCCGTCGAAACCAAGCCTAAACCGCCCTCCGTGGCTCCGCCCAATCCCAGGCCTCTCCCTCAAACAACACTTGCTTCTGATCAGCGCAAGTCCAATTCCGATCAGAATAAGTCCAATTTTCAGCACAACAGCAAACCGGTGGACGGGTTTGATCCATTTGACTCATTGGTCACTTCTGGGAAACGATCCAAACATGGGTATTCCTTGAATGTGTTCGAGTGTCCTATTTGCGGTCAATCCTTCACGTCTGAGGAAGAGACCACGATTCATGTCGATAGCTGTGTAAATAGTGGGGTTGAGCATAATGATAATCAGCATTCTTCAGAATTGTCCAATGGTGATAATGGTTCAACTGAATTGGAGGATCGGGTAGGCGTTTTTCTATCGGGTAAGCCTTCAGAGGGTTCCGTCGAGGTTGTTCTCAAGTTGTTGAGGAATATAGCTAAAGAACCAGGAAATGCCAAGTTCCGTAGAATTCGGATGGGTAATCCAAAGATAAGGGAAGCCATTAGCGAGGTTGTGGGAGGGGTTGAATTGTTGGAGTGTGTCGGATTTCAATTGCGAGAGGAGGGTGGGGAGATGTGGGCCGTGATGGAATCTGCTACAAAGGATCACATTGTTCTTATTAATATGGCAGTATCATTATTGGAACCGCAAAAGATGGAGAATTCATCTTCTCCAGTTTCTGCGGCTGATGTAGAAGAGCCCGTTGAGCTGAAAAAGGTCGACAGGCAGATCCGGGTTTTCTTTTCTGTGCCTGAGAGCGTAGCAGCAAAAATTGAGCTGCCAGATTCTTTTTTCAACCTCTCGATTGGAGAGCTGAAAAGAGAAGCCGATGCAAGGAAGAAAAAGATTGCAGAATCTCAGCTTTTGATCCCCAAGTCATACAAGGAAAAACAGGCAAAAATTGCAAGGAGGAGGTACACAAAAACTGTTATTCGGGTCCAGTTTCCTGATGGAGTTGTGCTCCAAGGTGTCTTTTCTCCTTGGGAACCAACCAGTGCTCTCTATGAGCAGGAGATAGAGCCACAACTTTAG 1191 0.4635 MDDMKDKVKGFMKKVNSPFSSSSSGKFKGQGRVLGSSSSGPSNPIHTRPSLPVETKPKPPSVAPPNPRPLPQTTLASDQRKSNSDQNKSNFQHNSKPVDGFDPFDSLVTSGKRSKHGYSLNVFECPICGQSFTSEEETTIHVDSCVNSGVEHNDNQHSSELSNGDNGSTELEDRVGVFLSGKPSEGSVEVVLKLLRNIAKEPGNAKFRRIRMGNPKIREAISEVVGGVELLECVGFQLREEGGEMWAVMESATKDHIVLINMAVSLLEPQKMENSSSPVSAADVEEPVELKKVDRQIRVFFSVPESVAAKIELPDSFFNLSIGELKREADARKKKIAESQLLIPKSYKEKQAKIARRRYTKTVIRVQFPDGVVLQGVFSPWEPTSALYEQEIEPQL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0543 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 152 IPR013087 -
Vvi1g0543 396 MobiDBLite consensus disorder prediction 72 96 - -
Vvi1g0543 396 CDD PUB 180 268 - -
Vvi1g0543 396 MobiDBLite consensus disorder prediction 1 102 - -
Vvi1g0543 396 Pfam PUB domain 185 253 IPR018997 -
Vvi1g0543 396 SUPERFAMILY Ubiquitin-like 329 389 IPR029071 -
Vvi1g0543 396 MobiDBLite consensus disorder prediction 53 71 - -
Vvi1g0543 396 SUPERFAMILY PUG domain-like 185 267 IPR036339 -
Vvi1g0543 396 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 389 - -
Vvi1g0543 396 SMART PGNneu 186 253 - -
Vvi1g0543 396 MobiDBLite consensus disorder prediction 15 49 - -
Vvi1g0543 396 Gene3D - 181 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0543 Vvi-Chr1 5295550 5300898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0543 1 392 C2H2 Transcription Factor Family AT2G01650 58.543 4.99e-153 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi1g0543 PUB 3.4e-16 No_clan