Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0542 ATGACTTTGAATGAAATGAACGGTCAGGATCCTGTGGATCATATATGCTCAAAAAGAAAGAAGGAAAAAAAAAGAAAAAGAATCATCCATCAAATAAATAAAAATCTGACTCCCTCTCTCTCTCCCTCACTTGCTGTCGTTGGAAGCATTTCGGCGGATGAGAAAGCTTTTCTTCCTCTCTCTAGCTTGGAGCGTGATAAGGATTCTAGGGTTTGGTGTTACAGAATAAAAGAGCTTCACCATTTGATCTGTGAATCTAGGATTTTCTCGGCTTGGTTTATTTTGAGCTCTGAAATGGAGAGAGATTTCATGGGTTTGAGTTCAAAAGAGCCCCTGGCTGTTGTGAAAGAGGAGATTATTGAAGGAGCATTTACTAAAGGTTCGGGAATACAGTGGCCCTTTTCAAACAAGATCTCTGCACTTCCTCATTTCATGTCTTTTAAGACTGCGCAAGAAGACAAGTCCAAAAAGGTTGCATCTGATTCCCTTGTGACTTCTGGATTTGACCCAAGTAACAAATGCCCAGCTGGTGAAATGCAGAAAGCAGTCAATCCCGATAGGCAAGGTGGAAGTTTTGCAGTGACAGCTTATCCTGTGCAACATGATTCACATTTAATGAATCATCATCCTCATGATGTCAAGATGTTTCCAGTCTCAAACCAAACGATTTCAGTTTCCATGGGCAACCCCTTTTTCAAGACCCATTTTGCTGCAGCTGGTCAGAACATGGTTGGTGCTGCCCTGAAGCAACAATTACTTGGAGGAATTCCTGTTTCAGCTCCACATGGAATTCTGCCCTCTGCTGGTTCTTTTGCTGGAATCACTGAACCATGGAATAATTTTAAGACATCTGGATCTCCTTCCCAATTGACCATCTTTTATGCTGGTACAGTGAATGTCTATGATGATATCTCGCCTGAGAAGGCTCAGGCTATCATGTTCTTGGCTGGGAATGGGGCTTCCATGGCTTCTAGAATGGGGCAACCGAGAGCTCAAGTCCAGACACCTGCTTCAAAGCTGGCAGCAGGTGATGGTGTCCTTGCAAACCAGCCCATGAATATATCACCTTGCTCTGGTCTCTCAAGCCCCATATCTGTTTCTTCACATCCTGTTGCTCAGTCTGGGAGTGGATCTACTAGCACCGAGGAAGTGTTGGCTGCTAAAACCACAGGGGTTTCTGCCACTCCTGTTACCAAATTGGATTCCCCTAAAATGCTCTCTGTTGCTGCAACACCTATGATGCCATCAGCTGTTCCTCAAGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGCAAGGAGAGGGTGATGAGCACAGCGCCATACAATATCAGCAAGAAATCCCCTGAATGTGCCACCCCAGGATCTAATGGCATGAGTTACACAGCGAGTTCTGGTGCAGGTGCAAGTGCTGGTGCTGGTGCTCTTTCAGCTAACAAGGAGTAG 1449 0.452 MTLNEMNGQDPVDHICSKRKKEKKRKRIIHQINKNLTPSLSPSLAVVGSISADEKAFLPLSSLERDKDSRVWCYRIKELHHLICESRIFSAWFILSSEMERDFMGLSSKEPLAVVKEEIIEGAFTKGSGIQWPFSNKISALPHFMSFKTAQEDKSKKVASDSLVTSGFDPSNKCPAGEMQKAVNPDRQGGSFAVTAYPVQHDSHLMNHHPHDVKMFPVSNQTISVSMGNPFFKTHFAAAGQNMVGAALKQQLLGGIPVSAPHGILPSAGSFAGITEPWNNFKTSGSPSQLTIFYAGTVNVYDDISPEKAQAIMFLAGNGASMASRMGQPRAQVQTPASKLAAGDGVLANQPMNISPCSGLSSPISVSSHPVAQSGSGSTSTEEVLAAKTTGVSATPVTKLDSPKMLSVAATPMMPSAVPQARKASLARFLEKRKERVMSTAPYNISKKSPECATPGSNGMSYTASSGAGASAGAGALSANKE* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0542 482 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 167 456 IPR040390 -
Vvi1g0542 482 Pfam Jas motif 419 443 IPR018467 -
Vvi1g0542 482 MobiDBLite consensus disorder prediction 365 384 - -
Vvi1g0542 482 ProSiteProfiles Tify domain profile. 283 318 IPR010399 -
Vvi1g0542 482 MobiDBLite consensus disorder prediction 442 468 - -
Vvi1g0542 482 MobiDBLite consensus disorder prediction 440 482 - -
Vvi1g0542 482 SMART tify_2 283 318 IPR010399 -
Vvi1g0542 482 Pfam tify domain 286 317 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0542 Vvi-Chr1 5284324 5288276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0542 130 449 Tify Gene Family AT3G17860 39.514 3.02e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vvi1g0542 tify 1.7e-16 No_clan