Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0539 ATGGATGCCTTCATTGGTGTAAATATAGGCACAGACCTCTCTAATATGCCAAACCCAACTCAAGTGGTGGCTCTCCTTAAGTCTCAGCAAATCCGACATGTCAGGCTCTATGATGCTGATCGTGCCATGCTTCTTGCACTTGCAAATACAGGAATCCGTGTAACTGTTTCAGTGCCCAATGACCAACTCCTTGGCATTGGCCAGTCCAATGCCACTGCAGCCAACTGGGTTGCACGGAATGTGCTAGCTCACATCCCTGCCACTAACATCACAGCCATAGCTGTTGGATCTGAAGTGCTAACTACCCTCCCAAATGCAGCACCAGTTCTAGTCTCTGCCTTAAAATTTATCCACTCTGCCCTTGTTGCTGCCAATCTTGATTCCCAAATCAAAGTCTCTACTCCACACTCTTCTTCCATCTTACTTGACTCATTCCCACCTTCCCAAGCCTTTTTTAACCGCTCCTGGGAACCGGTGATGGTTCCGTTGCTCAAATTTTTGCAGTCCACAAGTTCATATCTTATGCTCAATGTGTACCCATATTACGATTACATGCAATCAAATAGTGTGATCCCATTGGATTATGCACTCTTCCGTCCTCTCCCTCCAAACAAGGAAGCTGTGGATGCTAATACGCTCCTGCACTATACTAATGTCTTTGATGCTGTTGTTGATGCAGCGTTTTTTGCAATGTCATACCTAAACTTCACCAATATTCCCCTTGTAGTTCTTGAATCAGGCTGGCCTTCCAAGGGCGGCTCATCTGAGCCAGATGCTACTATTGACAATGCTAACACTTACAACAGTAACTTGATTAGGCATGTGCTTAACAACACAGGGACTCCCAAACACCCTGGTATTGCTGTTAGTACATACATTTACGAATTGTACAATGAGGATTTGAGACCTGGGTCGGTCTCAGAGAAGAATTGGGGACTTTTTGATGCAAATGGAATGCCAGTTTATATCCTACATTTGACGGGTTCTGGGACGGTTTTGGCAAATGACACCACAAATCAGACATATTGTGTTGCAAGGGATGGTGCTGACCCAAAGATGCTACAGGCAGCACTGGATTGGGCTTGTGGACCAGGCAAAGTGGACTGCTCCCCTCTGTTGCAGGGGCAACCATGTTCTGAACCAGACAATGTGGTTGCACATGCAACATATGCTTTTGATGCATACTATCACCAGATGGCTATGGGTCAAGGAACCTGTTACTTCAATGGGGTGGCGACCATCACTACCACTGACCCAAGTCATGGGTCATGCAAATTCCCAGGAAGTGCTGGAAGAAATAACACTTTCATAAATGGCACATCACTGGCTCCATCTTCAAATTCAACAAGTTCTGGCTCTCAATCACAATATTTCTATAGCAGTGGTGCCTTAATGAGCTGTATGATTATTGGTATTTTAGTTTGGAGTGCAGTTTTGTTGTAA 1443 0.4511 MDAFIGVNIGTDLSNMPNPTQVVALLKSQQIRHVRLYDADRAMLLALANTGIRVTVSVPNDQLLGIGQSNATAANWVARNVLAHIPATNITAIAVGSEVLTTLPNAAPVLVSALKFIHSALVAANLDSQIKVSTPHSSSILLDSFPPSQAFFNRSWEPVMVPLLKFLQSTSSYLMLNVYPYYDYMQSNSVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAVVDAAFFAMSYLNFTNIPLVVLESGWPSKGGSSEPDATIDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRPGSVSEKNWGLFDANGMPVYILHLTGSGTVLANDTTNQTYCVARDGADPKMLQAALDWACGPGKVDCSPLLQGQPCSEPDNVVAHATYAFDAYYHQMAMGQGTCYFNGVATITTTDPSHGSCKFPGSAGRNNTFINGTSLAPSSNSTSSGSQSQYFYSSGALMSCMIIGILVWSAVLL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0539 480 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 415 IPR044965 GO:0004553|GO:0005975
Vvi1g0539 480 FunFam Glucan endo-1,3-beta-glucosidase 4 336 430 - -
Vvi1g0539 480 Gene3D - 335 441 - -
Vvi1g0539 480 Pfam Glycosyl hydrolases family 17 5 324 IPR000490 GO:0004553|GO:0005975
Vvi1g0539 480 SUPERFAMILY (Trans)glycosidases 5 324 IPR017853 -
Vvi1g0539 480 Gene3D Glycosidases 4 330 - -
Vvi1g0539 480 SMART X8_cls 341 426 IPR012946 -
Vvi1g0539 480 Pfam X8 domain 342 413 IPR012946 -
Vvi1g0539 480 FunFam Glucan endo-1,3-beta-glucosidase 3 4 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0539 Vvi-Chr1 5139326 5142329 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0539 3 472 Glycoside Hydrolase AT1G66250 73.053 0.0 716