Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0538 ATGAAGAATTCACATATTGTGGAGAACAAAGAACACGAGGCTGTTAATGGGTCTATGCTAAGGGGGGCAGTTCTGCCTTCACTTGGTCATTCGCAAAAGGAGCTTACTATCCAGGAGGTTGAGCGAGGGCCGCCCCATGAGGCTTTGCTTCTCGTCTTAGCTTACCTTCCTTTATTTGAGCTGCTCAACATGAGTGAAGTTTGCAGGTCACTGAGAGATGCAGTGGACAAAGATGTGTTGCAGTGGCTGGATATCATCGTGGAAAAGCCTTTGAACATGCTGTTTTCTGATGAGATTATGATCAAACTTACCTCGAAGGCGAATGGTAGGTTGAGAACTTTGGCTCTGATGAGCTGCACCAAGATTACAGATGATGGACTTCAACAGGTTATAGAGAAAAATCCCCTTATTAACAGGCTCTATTTGCCAGCATGCACTGGCCTAACTCCTGAGGGCATCATGAGAGCAGTGAAGACGCTAACCGAACATTATCAAGCTTTAAAGTGTGTAAGGATAAATGGTGTCTACAACATGAAGAAAGAACATCTTGAAACACTTAGCTCCTACCTTCAAATGAACCCGGCAAAGATGGAGGGGCAAATGCAGCAGCTTTGCTTCTTTCATGACCATAGAAACATCTCAGTACTCAGAGTTGAAGAAAGTTATCGCCCAATTGACCTGGAAATCTGCCCGAGGTGTAATGAAGTAAGGATGGTTTTTGATTGCCCAAGGGAAACCTGCAAGAAGAAGAGGGAAAGGGCGATGGCTGAATGCAGGGGATGCTACTTTTGCATTCCAAGGTGTGAAGAGTGTGGCAAATGCATTGAAGTTGAAGAGCCTGGGGAGGTTGTTTGTGCAGATGTCCTGTGTTCAGATTGCTGGCTTCAGCTCCCTAAATGTAATTTCTGTAACAGGCCATATTGTAGCCGACATGCCAATCTGCAGCACAGCACTTCAGGTTCGACAGGTTTTATTTGTTGCATTTGTCATGTAAATTTCATTGGAGATTTCATGTGA 1017 0.4464 MKNSHIVENKEHEAVNGSMLRGAVLPSLGHSQKELTIQEVERGPPHEALLLVLAYLPLFELLNMSEVCRSLRDAVDKDVLQWLDIIVEKPLNMLFSDEIMIKLTSKANGRLRTLALMSCTKITDDGLQQVIEKNPLINRLYLPACTGLTPEGIMRAVKTLTEHYQALKCVRINGVYNMKKEHLETLSSYLQMNPAKMEGQMQQLCFFHDHRNISVLRVEESYRPIDLEICPRCNEVRMVFDCPRETCKKKRERAMAECRGCYFCIPRCEECGKCIEVEEPGEVVCADVLCSDCWLQLPKCNFCNRPYCSRHANLQHSTSGSTGFICCICHVNFIGDFM* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0538 338 Gene3D - 43 81 - -
Vvi1g0538 338 Gene3D Ribonuclease Inhibitor 82 193 IPR032675 -
Vvi1g0538 338 Pfam F-box domain 45 80 IPR001810 GO:0005515
Vvi1g0538 338 SMART fbox_2 44 84 IPR001810 GO:0005515
Vvi1g0538 338 PANTHER MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B 23 311 - -
Vvi1g0538 338 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 258 269 IPR017900 -
Vvi1g0538 338 SUPERFAMILY F-box domain 45 88 IPR036047 GO:0005515
Vvi1g0538 338 ProSiteProfiles F-box domain profile. 45 85 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0538 Vvi-Chr1 5136719 5138635 Transposed