Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0917 ATGGCGATGCGAGAGCTAGTTACGGGTGGAGCGGCTTGTGCCGTTCCAGGGTCTTCTTCTTCTTCGAATCCTCTCGGTGCTCTGGCCAACGCCCTTATTGGCTCCTCTTCAAAGACACAGGAACGGCTGAATGAGATTCCTACTGCAATACCCACAAGTTCTGATGGTCAATTCTACTCAGAGACAAATGATCGTTTGGCGACATTGCCGGGGTCCGAGTTTGATCAGCAACAATTTCTGCAACCTAATGGCTCGGAATTCCTCCGTGGATTCCACTCTGCAGGTCAGAGTGACCTTGCTGATGCATGGAATGAGATACACCATCCTCCAGTCCCTGCCCATCCAGAGCTAGGGCGCATACATGATGGAGGAGTTCGCACCCAGCTTCAACCAACTTTGGATGGGACTCCACAACGAGTATTGTCAAGCTTTCTGCACACATTTGTTGACAGTAGCCGTGGTGGTATTCCTTTCCGTCCCACTCCCCTTCCCCTATTAGGATTGTCAGAAGGTGACAAACAGTGCATTCGTGATCGTAGCAGCATCATGGCCCGACACTTTTTTGCTGATAAGAGTGAAGACTTTATTAATGCGCAGGTGAATGCTTTATTATGTTCTTTAGAAATTGATAGTGATATCCAGGCTAAGGGGCCTCCCCCTGGAAGATTTCGGGAGCTGGAGGAGTATTGGAATGAATCTCAGGGTGCCCTGGGACCTGGGCCTCATGCTGCAGATGGATGGATTGCTGAATTTGGACAACACAGAGCAGAGCATGGTGGTCCTGATGCTTGGGCTCACTCATTTGTGCAACAACACGGTGCTAATGGTTGGGCTTCTGAATTTGAGCAGGAACAAACTCAGATTGCACAAATGAGAGGTGCAAATATCTCAAACTTAGCTGCAATGGAGCAGACTCGAATGCTTGCACACACATTAGCTCAAAACAATGACCCTAAATTTCAGAATTCAAAGTTTCTCCAATTTGTGTCAAAGATGAGTCGAGGTGAACTTATCATTGATGATAATCAAGTCAAGCCAGGTGCATCATCTTCATCTGGGGATTGGGCAGGAGAATTTCAACAGCAATATAGTGGGGGTCTTAATTGGGCTGACCAATTTGTGCATGATGCGGGACCTGAGAGATGGGTGAATGAGTTTACTACAGAAGCTAAGCAGCGTGGATCAGTTGATGACCCATGGGTGGATGAATTCTCTAAGTTGCATATTCAGGATTGGGTGGAAGAATTTGGGCAGCAGGATGAAGGGGCTGCTGATAACTGGGCAACTGCATATGATGAGTACCTAAATGAGCAAGAAGCTTCTAAGCAGCAGTCAGACAAGTCAAGGGGTGTTTATGTCTTTTCCGATATGAATCCATATGTTGGTCATCCCAATCCCTTGAAAGAAGGTCAGGAGCTGTTTCGCAAAGGGCTTCTGAGTGAAGCAGTACTTGCATTAGAGGCTGAAGTTCTAAAAAACCCAGACAATGCTGAAGGTTGGAGGTTACTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCTATTGCATCCATGATGCGTGCACAAGAAGTTGAGCCAACAAACCTGGAAGTGCTTCTTGCGCTTGGCGTGAGTCATACAAATGAATTGGAGCAGGCAGCTGCATTGAAATATCTATATAGTTGGCTACGCCATCATCCAAAGTATGGGACCCTTGCCCCTATGGAACAGTCTGATTCTCTGTATTATGCTGATGTTGTCAGATTATTCAATGATGCTGCTCAAATGTCACCTGAGGATGCTGACGTCCACATAGTACTTGGTGTCCTGTATAATTTATCCAGAGAATATGACAAAGCTATTGCATCCTTTCAGACGGCTTTGAAACTCAAGCCACGTGATTACTCCCTTTGGAACAAGCTTGGTGCAACACAAGCTAACAGTGTTCAGAGCGCAGATGCAATATTAGCTTATCAACAGGCACTGGATTTGAAGCCTAATTATGTCCGTGCATGGGCGAACATGGGTATCAGTTATGCCAACCAGGGTATGCATGAGGATTCTATTCGTTACTATGTCCGGGCACTTGCAATGAATCCAAAGGCAGATAATGCCTGGCAATATTTGAGAATTTCTCTTAGCTGCGCATCCCGGAATGACATGATGGAAGCTTGTGATGCTCGGAATCTTGATATTCTGCAGAAGGAGTTTCCTCTTTAA 2205 0.4612 MAMRELVTGGAACAVPGSSSSSNPLGALANALIGSSSKTQERLNEIPTAIPTSSDGQFYSETNDRLATLPGSEFDQQQFLQPNGSEFLRGFHSAGQSDLADAWNEIHHPPVPAHPELGRIHDGGVRTQLQPTLDGTPQRVLSSFLHTFVDSSRGGIPFRPTPLPLLGLSEGDKQCIRDRSSIMARHFFADKSEDFINAQVNALLCSLEIDSDIQAKGPPPGRFRELEEYWNESQGALGPGPHAADGWIAEFGQHRAEHGGPDAWAHSFVQQHGANGWASEFEQEQTQIAQMRGANISNLAAMEQTRMLAHTLAQNNDPKFQNSKFLQFVSKMSRGELIIDDNQVKPGASSSSGDWAGEFQQQYSGGLNWADQFVHDAGPERWVNEFTTEAKQRGSVDDPWVDEFSKLHIQDWVEEFGQQDEGAADNWATAYDEYLNEQEASKQQSDKSRGVYVFSDMNPYVGHPNPLKEGQELFRKGLLSEAVLALEAEVLKNPDNAEGWRLLGIAHAENDDDQQAIASMMRAQEVEPTNLEVLLALGVSHTNELEQAAALKYLYSWLRHHPKYGTLAPMEQSDSLYYADVVRLFNDAAQMSPEDADVHIVLGVLYNLSREYDKAIASFQTALKLKPRDYSLWNKLGATQANSVQSADAILAYQQALDLKPNYVRAWANMGISYANQGMHEDSIRYYVRALAMNPKADNAWQYLRISLSCASRNDMMEACDARNLDILQKEFPL* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0917 734 ProSiteProfiles TPR repeat profile. 497 530 IPR019734 GO:0005515
Vvi19g0917 734 SMART tpr_5 596 629 IPR019734 GO:0005515
Vvi19g0917 734 SMART tpr_5 664 697 IPR019734 GO:0005515
Vvi19g0917 734 SMART tpr_5 630 663 IPR019734 GO:0005515
Vvi19g0917 734 SMART tpr_5 497 530 IPR019734 GO:0005515
Vvi19g0917 734 ProSiteProfiles TPR repeat profile. 630 663 IPR019734 GO:0005515
Vvi19g0917 734 ProSiteProfiles TPR repeat region circular profile. 596 629 - -
Vvi19g0917 734 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 732 IPR024111 -
Vvi19g0917 734 SUPERFAMILY TPR-like 448 734 IPR011990 GO:0005515
Vvi19g0917 734 ProSiteProfiles TPR repeat profile. 664 697 IPR019734 GO:0005515
Vvi19g0917 734 Pfam Tetratricopeptide repeat 665 696 IPR001440 GO:0005515
Vvi19g0917 734 Gene3D Tetratricopeptide repeat domain 445 734 IPR011990 GO:0005515
Vvi19g0917 734 Pfam Tetratricopeptide repeat 467 521 - -
Vvi19g0917 734 Pfam Tetratricopeptide repeat 610 662 - -
Vvi19g0917 734 ProSiteProfiles TPR repeat profile. 596 629 IPR019734 GO:0005515
Vvi19g0917 734 ProSiteProfiles TPR repeat region circular profile. 664 696 - -
Vvi19g0917 734 FunFam Peroxisome biogenesis protein 5 446 734 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0917 609 720 Glycosyltransferase AT3G04240 30.357 3.44e-08 55.1