Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g0915 ATGGGTGCTTGCTATTCATCCATCGGGAAGAGGTATAAAGGAGGAGGTGGTGGTGGTGGTTGTGGTGGTGGTGGGGGTGGTGGTGGTGCTACTACCAGTATCATTTCCTATTCATCAAGGAATTTGTTTGGAGGGGGAGAAAATGAGCTCCATCGGATTCCCCAGAGAATGTTCGTCAACGGTGCCAGCACCGTCGCCTCTTTATTCACACAGCAGGGCAAGAAGGGTACCAATCAGGACGCCATGCTTGTTTGGGAGAATTTCAGTTCAAGAAGTGATACAATCTTCTGTGGAGTATTTGATGGTCATGGTCCTTATGGTCATATGGTTGCAAAGAAAGTGCGGGACTGTCTTCCTTTGATTCTACACACTCAGTGGCAAGCTAACTCAAATAGTGATAAAAAAAGTGATGGTAAGAATGGAAATGCTCCTGAGAAGACAAATTTGGAAGAAACTGCATCTTTGAACATGGATGATGAATATTATGAGTCATTGGAGGTTGATGACAATGAAAAAGTCCCTGAGATGTATCTTCCACTCAAAGAGTCCTTTTTAAAGGCTTTCAAGCTAATGGACAAGGAATTGAAGTTGCATCCAACAATCGATTGTTTCTGCAGTGGAACTACTGCTGTAACTTTGGTAAAGCAGGGACCAAATCTTGTAATTGGAAATATTGGTGATTCAAGAGCAGTACTGGCAACAAGAGACGTAGAGAACTCCTTGACAGCGGTACAACTAACCATAGACTTGAAACCCAATCTGCCAAGGGAAGCAGCTAGGATCCATCAATGCAAGGGAAGGGTTTTTGCATTGCAGGATGAGCCAGAGGTTGCACGAGTATGGTTGCCTAATAGTGACTCACCTGGTTTGGCAATGGCTAGAGCTTTTGGGGACTTCTGTTTGAAGGATTTTGGTTTAATTTCTGTGCCAGATATTTATTATCGCCATCTCACTGAGAGGGATGAGTTCATTATTCTTGCCACTGATGGGGTTTGGGATGTTCTCTCAAATAAGGAAGCTGTTGATATCGTAGCTTCAGCCCCTGGTCACACAACAGCAGCCAGAGCTCTGGTAGACTGTGCTGTTCGAGCATGGAGGCTCAAATACCCTACATCCAAAAATGATGATTGTGCTGTAGTGTGCCTCTTCCTGGAACATGCATCTGCTGTTGATGAGACTCCCACAGAGAATGGTTTGACGAAGACTCCAGAAGCAGTAGCAGATGGGATGATAGTTGTGGATGGGGAGAATGGGGGTTCGGATGTTGATTCTCGGCCCTCTCATGCTCATGTTCTTGAGCATTCCAGTACTGCAGAAGGCTGTAATGAGATCATGCCTCTTTCTGAGTCAACTGAGGAAAAGTTATCTGACAAGTGCCGAGGCCAGTCTAAGAGGAGCCTAGCTGAGTGCATTTCAACTGCAGAGGATGAGGAGTGGTCAGCATTAGAGGGTGTTACCAGGGTGAATAGTCTGCTTAGCCTTCCCAGATTTTTATCTAGTGATAAAAGTGCGGCCAACTGGAGAAAATGGTTATGA 1536 0.4525 MGACYSSIGKRYKGGGGGGGCGGGGGGGGATTSIISYSSRNLFGGGENELHRIPQRMFVNGASTVASLFTQQGKKGTNQDAMLVWENFSSRSDTIFCGVFDGHGPYGHMVAKKVRDCLPLILHTQWQANSNSDKKSDGKNGNAPEKTNLEETASLNMDDEYYESLEVDDNEKVPEMYLPLKESFLKAFKLMDKELKLHPTIDCFCSGTTAVTLVKQGPNLVIGNIGDSRAVLATRDVENSLTAVQLTIDLKPNLPREAARIHQCKGRVFALQDEPEVARVWLPNSDSPGLAMARAFGDFCLKDFGLISVPDIYYRHLTERDEFIILATDGVWDVLSNKEAVDIVASAPGHTTAARALVDCAVRAWRLKYPTSKNDDCAVVCLFLEHASAVDETPTENGLTKTPEAVADGMIVVDGENGGSDVDSRPSHAHVLEHSSTAEGCNEIMPLSESTEEKLSDKCRGQSKRSLAECISTAEDEEWSALEGVTRVNSLLSLPRFLSSDKSAANWRKWL* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g0915 511 FunFam probable protein phosphatase 2C 33 60 387 - -
Vvi19g0915 511 MobiDBLite consensus disorder prediction 129 151 - -
Vvi19g0915 511 Gene3D - 60 392 IPR036457 -
Vvi19g0915 511 Pfam Protein phosphatase 2C 80 362 IPR001932 -
Vvi19g0915 511 SMART PP2C_4 57 382 IPR001932 -
Vvi19g0915 511 ProSiteProfiles PPM-type phosphatase domain profile. 65 384 IPR001932 -
Vvi19g0915 511 MobiDBLite consensus disorder prediction 129 153 - -
Vvi19g0915 511 PANTHER PROTEIN PHOSPHATASE 65 382 IPR015655 GO:0004722|GO:0006470
Vvi19g0915 511 SUPERFAMILY PP2C-like 57 385 IPR036457 -
Vvi19g0915 511 CDD PP2Cc 65 384 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g0915 Vvi-Chr19 10712939 10725826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g0915 40 511 PP2C-type Phosphatase Gene Family AT1G16220 62.395 0.0 589