LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g3207	ATGGTGAAATCGAACGAAAATGGTTCTGGTTCAGGTGCGGTGCCTCCGTTCTTGAAAAAGTGTTACGATATGGTTGAAGACCGGAACACGGACTCCGTTATCCGTTGGAGCGATGGCGGCGACAGTTTCGTGATATCTGACACCACGCAATTCTCCGTCACGCTACTTCCTACCTATTTCAAACACAACAATTTCTCCAGTTTTATTAGACAACTCAATATTTATGGTTTTAGGAAAATTGATACGGATTGCTGGGAATTTGCCAATGAAAATTTTGTTAGGGGTCAAAAGCAATTGTTGAAAAATATACGCAGAAGAAAACATCCAAACGTTGCAGACCAACAAAAAGCATTGCCTCAGAATGACAATAGTGATGAACCATCCCAAGAGGTACCTCATCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATCTGATAAAAATTCGCTGACCCAGGAGTTGGTCAAACTCAGGCAACACCAGGAATCTGCTGAGAACAAGTTGCTGCTCCTGAGCGATCGCCTTCAAGGAATGGAAAAGCATCAGCAACAGATGTTATCATTCTTAGTCATGGTCGTGCAAAGCCCTGGGTTCCTGGTTCAATTGCTTCATCCAAAGGAAAATAATTGGCGTTTGTCTGAATCGTGGAATGTATTAGATCAAGATAAACAAGATGACAATCCAATTGCTTCTGATGGGATGATAATAAAGTATACGCCACCTGTAGGTGAAAAACTCAAGCCTGTAGTTCCCCTACCTCCTGCTTTTGAAAAACAATCAGAACCTGACCTTGCTGCAGATGGGCTCAAAGACTTGTGCATTAGTTCTGAGTTCATGAAAGTGCTTATGGATGAAAAATTGAGTCCACTAGAAAACCATTCCCCATTTCTCCTACCAGATTTACATGATGACGGTTCGTGGGAACAGCTTTTCCTAGGCAGTCCTTTCCTGGGAAACATTGAAGATTCTAATAAAGAAAGTGAGGGGCGCACGGATAGTGGAATGGAAATGGAACCGACAATATCTGAGACCCCAAATGAAAATTCTCGAACTTTTGAATCGATGATTGTAGAGATGGAGAACACTCGAGAATGA	1095	0.421	MVKSNENGSGSGAVPPFLKKCYDMVEDRNTDSVIRWSDGGDSFVISDTTQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDCWEFANENFVRGQKQLLKNIRRRKHPNVADQQKALPQNDNSDEPSQEVPHHGLWKEVENLKSDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQSPGFLVQLLHPKENNWRLSESWNVLDQDKQDDNPIASDGMIIKYTPPVGEKLKPVVPLPPAFEKQSEPDLAADGLKDLCISSEFMKVLMDEKLSPLENHSPFLLPDLHDDGSWEQLFLGSPFLGNIEDSNKESEGRTDSGMEMEPTISETPNENSRTFESMIVEMENTRE*	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g3207	364	Gene3D	-	10	107	IPR036388	-
	Vra7g3207	364	MobiDBLite	consensus disorder prediction	318	353	-	-
	Vra7g3207	364	MobiDBLite	consensus disorder prediction	107	132	-	-
	Vra7g3207	364	MobiDBLite	consensus disorder prediction	337	353	-	-
	Vra7g3207	364	SUPERFAMILY	"Winged helix" DNA-binding domain	13	106	IPR036390	-
	Vra7g3207	364	Pfam	HSF-type DNA-binding	17	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	1	348	IPR027725	-
	Vra7g3207	364	SMART	hsfneu3	13	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	Coils	Coil	140	167	-	-
	Vra7g3207	364	ProSitePatterns	HSF-type DNA-binding domain signature.	56	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	PRINTS	Heat shock factor (HSF) domain signature	17	40	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	PRINTS	Heat shock factor (HSF) domain signature	55	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g3207	364	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-8	1	348	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g3207	Vra-Chr7	51682273	51685262	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g3207	14	315	HSF	AT1G67970	49.671	1.44e-92	280

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra7g3207		HSF_DNA-bind	5.9e-32	CL0123

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra7g3207	7	51682273	51685262	Vra7g3207	7	51682273	51685262	ECH