Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3198 ATGGCTATGGCAAAAGAGAAAGAGGAAGATGAAGAGGAGGTTCAGACCTGTGGGAAGAGGTTGAAATGCATGAAGAATGATGAAGAAGATGATAATGGTGTTGATGAAGAAGAGAGCGAGCTTCCTCTGAAACCAGGGATTTTCTTCTACCCGACAACCCCAACTTCATTTGTTGTCTCTGATGCTCTTGAACCTGATTTTCCGGTCATATATGTCAACAAGGTCTTTGAAATCTCCACTGGATATCGTGCCGACGAGGCCCTCGGTCGCAACTGTCGGTTCTTACAGTATAGAGATCCTCGAGCTCAGAGGCGACACCCTTTGGTGGACCCTGTTGTTGTGTCTGAGATCAGAAGATGTCTTGAGGAAGGTGTTGAGTTCCAAGGTGAACTTTTGAATTTCAGAAAGGACGGCACGCCATTGGTGAACAGACTAAGACTTGCACCAATTCATGACGATGATGGGACTGTGACACACGTAATAGGTATCCAACTCTTTTCTGAGGCAAATATAGATCTGAACCGAGTCTCATATCCAGTATTCAAAGAGACTTGCAATCAGGATTTTGCCAAGAATGGTAAATATTCTCCAAAGAGTGGACAATGTTTGTACAGTCAGCAGCAAGAGATGTGCGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCACAACATTTTGTCACGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTCTGTAGAAGAATACGTCAATTAACAAAGAATGAGCATGTTAGGAAGATGGTATGTCAGAATGCTTGGGGCAAAGAAGTGACAGGAACATTGGAACTGATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAACTCACCACCCTTGAGGCTGTTTGTTGGAGAAAACTGACAGTTGGGGGAGCAGTGGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCTGCAGGAAACCGACTAGTATTGTTTGGAGGTGAAGGAGTCGACATGCAGCCTATGGACGACACTTTTGTTCTAAATCTTGACGCTAAAAATCCAGAATGGCGCAGGGTTAGTGTGAAATCATCCCCACCTGGAAGATGGGGCCACACACTCTCATGTTTAAATGGTTCTTGGTTGGTGGTTTTTGGTGGCTGTGGTAGGCAAGGACTGCTCAATGATGTGTTTGTGCTTGATTTGGATGCTCAACAGCCAACATGGAGGGAAGTCTGTGGTGGAACCCCACCACTTCCCAGATCATGGCATAGTTCTTGCACAATTGAAGGGTCGAAATTGGTGGTCTCCGGCGGGTGCACGGATGCAGGTGTACTTCTTAGTGACACGTATTTACTGGATCTCACAACGGAGAATCCAACATGGAGAGAAATTCCAACATCATGGGCTCCTCCATCTCGGTTGGGGCACTCACTCTCAGTGTATGGGAGGACGAAGCTTCTGATGTTTGGTGGACTTGCCAAGAGTGGACACTTGCGGCTACGATCAGGTGAGGCTTATACAATTGACTTGGAAGATGAACAACCACAATGGAGGCAGCTAGAATATAGTGCATTCACAGGATTAGCAAGTCAAAGTGCTGTTGTTCCTCCTCCCAGACTGGATCATGTTGCTGTGAGTATGCCTTGTGGGAGGATCATTATATTTGGAGGTTCCATTGCGGGTCTTCATTCACCGTCTCAGCTCTTTCTCTTGGACCCTTCTGAAGAGAAACCATCTTGGAGGATCCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTACTGGTGTTGGGGGGACACACTGGGGAGGAGTGGATACTGAATGAGTTGCATGAGTTATGCCTGGCAAGTCGTCAGGATTCTGACCTGTAA 1881 0.4705 MAMAKEKEEDEEEVQTCGKRLKCMKNDEEDDNGVDEEESELPLKPGIFFYPTTPTSFVVSDALEPDFPVIYVNKVFEISTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGVEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQLFSEANIDLNRVSYPVFKETCNQDFAKNGKYSPKSGQCLYSQQQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWREVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTENPTWREIPTSWAPPSRLGHSLSVYGRTKLLMFGGLAKSGHLRLRSGEAYTIDLEDEQPQWRQLEYSAFTGLASQSAVVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDL* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3198 626 Pfam PAS domain 63 163 IPR000014 -
Vra7g3198 626 Pfam Kelch motif 531 578 IPR011498 GO:0005515
Vra7g3198 626 Gene3D - 510 624 IPR015915 GO:0005515
Vra7g3198 626 SUPERFAMILY Kelch motif 293 512 IPR015915 GO:0005515
Vra7g3198 626 SUPERFAMILY Kelch motif 513 616 IPR015915 GO:0005515
Vra7g3198 626 Gene3D PAS domain 50 175 - -
Vra7g3198 626 Pfam Galactose oxidase, central domain 307 357 - -
Vra7g3198 626 Gene3D - 206 257 - -
Vra7g3198 626 Gene3D - 285 509 IPR015915 GO:0005515
Vra7g3198 626 SUPERFAMILY F-box domain 206 265 IPR036047 GO:0005515
Vra7g3198 626 Pfam Galactose oxidase, central domain 421 472 - -
Vra7g3198 626 Pfam Galactose oxidase, central domain 372 419 - -
Vra7g3198 626 TIGRFAM sensory_box: PAS domain S-box protein 69 163 IPR000014 -
Vra7g3198 626 Pfam F-box domain 213 250 IPR001810 GO:0005515
Vra7g3198 626 SUPERFAMILY PYP-like sensor domain (PAS domain) 64 164 IPR035965 -
Vra7g3198 626 PANTHER ADAGIO PROTEIN 3 11 623 - -
Vra7g3198 626 CDD PAS 53 163 IPR000014 -
Vra7g3198 626 SMART pac_2 128 169 IPR001610 -
Vra7g3198 626 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 11 623 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3198 56 177 AGC Kinase Gene Family AT5G58140 34.677 2.01e-14 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3198 7 51624645 51628362 Vra7g3198 7 51624645 51628362 ECH