Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3187 ATGGCCACATCGAAGACGGTGATGTGTTCGCTGAGCCACTTCCGTCCGCTAACATGCGCCGCATCTGCATCGGCGTCACGATTAGTTCCCTACCCACCCGACCTAATAAAGTGGGTAGCCAGAGAGGGCGGTTTCGTGCACCGCGCGCTGGATATAGCACAACTGGGTTCATCCAACGGACTGGGTGTGGTGGCCAAGGAACCAATTCCACGTGGCACTGACCTAATTGTCCTCCCGCACCACCTTCCCCTGCGCTTTACCACTCTTGAACACGACCCTGTGCTACATCACTTGGCGCGCCAAATCCCTGAGGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTGCAAGAGAGGGCTAAAGTTGGGTCCTTTTGGTGGCCGTACATAAGTAATCTCCCTGAAACATACACCGTGCCTATTTTCTTTCCTGGGGAGGACATAAAGAACTTGCACTATGCTCCACTTCTTCATCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGCAGTGAAGCGTGCCTTAGCAAGTGTTAAGCCAGATAGCCATCCTTTTGCTGGTCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGAGCCTTCAGGTTGTATGGTGAAAAGGATCAGAATGGGGACCGGATTCACATACCCATGATGCTCCCTCTGATTGATATGTGCAATCATAGTTTCAATCCAAATGCTAGAATTGTTCAGGAAGAAGATACCAATACCATGAAGATGCAAGTGAAGGTTGTGGCTGAGACAGCCATCAAAGAAGATGACCCTCTGTTACTTTGCTACGGCTGTTTAAACAATGATTTTTTCCTTCTTGATTATGGATTTGTGATTCACTCAAACCCTTTTGATTGTATTGAGCTCAAATATGATGGCGCCCTTTTGGATGCTGCAAGCTCTGCAGCTGGAGTTTCTTCACCAAATTTCTCAGCACCTGCTCCGTGGCAGGAACAGATTTTATCTCAGTTGAATCTATCTGGAGAAACTCCAGATCTCAAGGTGACCTTAGGTGGTCAAGAAACAGTAGAGGGCCGCTTGGTGGCTGCATTACGAGTAGTCCTTTCGAGTAATGTGGAAACTGTGCAGAAGTATGATCTCAGTACACTAAAGTCTTTGGATGTTGAGGCTCCTCTCGGTGTTGCAAATGACATAGCTGTATTTCGCACTCTAATTGCTTTGTGCGTCATCGCACTGGAACACTTTCCGACCAAAATAATGGATGATGAATCTCTGTTGAAGCAGGGTGCTTCAGGTCCAACCGAGTTAGCCATTCAGTACAGAATCCAAAAGAAATGCGTGATTATAGACGTAATGAAAAATCTCTCAAGGAGGGTAAAGCTTCTATCATCAAAGGAAACAGCTACCGCTGAAGGCTGA 1419 0.4665 MATSKTVMCSLSHFRPLTCAASASASRLVPYPPDLIKWVAREGGFVHRALDIAQLGSSNGLGVVAKEPIPRGTDLIVLPHHLPLRFTTLEHDPVLHHLARQIPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYTVPIFFPGEDIKNLHYAPLLHQVNKRCRFLLDFEQAVKRALASVKPDSHPFAGQEVDASSLGWAMSAVSSRAFRLYGEKDQNGDRIHIPMMLPLIDMCNHSFNPNARIVQEEDTNTMKMQVKVVAETAIKEDDPLLLCYGCLNNDFFLLDYGFVIHSNPFDCIELKYDGALLDAASSAAGVSSPNFSAPAPWQEQILSQLNLSGETPDLKVTLGGQETVEGRLVAALRVVLSSNVETVQKYDLSTLKSLDVEAPLGVANDIAVFRTLIALCVIALEHFPTKIMDDESLLKQGASGPTELAIQYRIQKKCVIIDVMKNLSRRVKLLSSKETATAEG* 473
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3187 472 CDD SET_LSMT 49 291 - -
Vra7g3187 472 PANTHER F21J9.27 5 469 - -
Vra7g3187 472 Pfam SET domain 60 277 IPR001214 GO:0005515
Vra7g3187 472 Pfam Rubisco LSMT substrate-binding 325 447 IPR015353 -
Vra7g3187 472 ProSiteProfiles SET domain profile. 48 277 IPR001214 GO:0005515
Vra7g3187 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Vra7g3187 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 469 - -
Vra7g3187 472 SMART set_7 48 283 IPR001214 GO:0005515
Vra7g3187 472 Gene3D - 324 469 IPR036464 -
Vra7g3187 472 Gene3D set domain protein methyltransferase, domain 1 13 290 - -
Vra7g3187 472 SUPERFAMILY SET domain 33 295 IPR046341 -
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra7g3187 SET 3.7e-12 No_clan
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3187 7 51547734 51550638 Vra7g3187 7 51547734 51550638 ECH