Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g3175 ATGGAGAGAGATTTCATGGGACTCAACTCGAAAGAACCACCCACTGCTGTGAAGGAGGAGATCAACGTTGATGGCTACGAAGAGTCTGGCTTCACAAAGGGTTCCATCGCACAGTGGCCTTTTTCGAACAAAGTATCCGCCATTCCACATTTGATGTCTTTCAAGGCTTCTCAAGATGATAAGACTAAGAAGATGTTGTCTGGTCCCATAACAGCTGGTCTTTTATCTATCTTAAGTCAAGATGCAATTGAGTCTAGTCACAAACGCTCTGCCGGTGACACCCAGAAATCTTTCAATCACGATGGGCAAGGTGGTCATCATTTTTCCCTGACTCCATTTCCAGTACAACATGATGTGAATTCTGTGCATCGTCCTCATGATGTGAAGATGTTTTCTGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGAATCCATTCCTGAATAATCATTTTGCCACTAGTGGCCAGAATATGAATGGCACTGGTGTGAAGCAGCCATTACTTGGGGGAATACCTGTTTCTGTGCCCCATTTAGTTATTCCCAACGCTGGTGCTGTTGCTGGAATGGTTGAACCATGTATGAGACCATCTCCGCCTTCTGCCCAGCTTACCATCTTCTATGGGGGAACTGTCAAAGTCTTTGATGATATCTCTGCTGAAAAGGCTCAAGCTATCATGTTGTTGGCTGGCAGTAGCGTATCTGTAGCTCCTAGCATGGTCCAGCCAAAAGTTCACATGCCAGTCTCGAAGTTGGCTGCTGGCGACGGTGTTCCTGCGACTCAACCTGCAAATTCGCCACCCGGCTCTGGCCTTTCAAGCCCTATATCTGTTTCTTCACATACTGGAGCACAATCAGGGAGTGGCTCAACCAGCACTGATGAATTTCTTGCTGCTAAAACAACTGGAGTTCCCACCACTCCTGTTAGCAATGTGGAGCCTCCAAAGGTAGTCAGTGCAGCCACTATGTTGACATCAGCTGTACCTCAGGCTAGGAAAGCATCCTTGGCTAGATTTTTAGAAAAGCGCAAAGAAAGGGTGACGAGTGCAGCACCATACAACCTTAACAAGAAGTCTGAAGAGTGTGGCCCTGCAGAATTTGCCGGTGTCATCTCAATGCAAGGATAG 1125 0.4684 MERDFMGLNSKEPPTAVKEEINVDGYEESGFTKGSIAQWPFSNKVSAIPHLMSFKASQDDKTKKMLSGPITAGLLSILSQDAIESSHKRSAGDTQKSFNHDGQGGHHFSLTPFPVQHDVNSVHRPHDVKMFSVPNQAISVSMGNPFLNNHFATSGQNMNGTGVKQPLLGGIPVSVPHLVIPNAGAVAGMVEPCMRPSPPSAQLTIFYGGTVKVFDDISAEKAQAIMLLAGSSVSVAPSMVQPKVHMPVSKLAAGDGVPATQPANSPPGSGLSSPISVSSHTGAQSGSGSTSTDEFLAAKTTGVPTTPVSNVEPPKVVSAATMLTSAVPQARKASLARFLEKRKERVTSAAPYNLNKKSEECGPAEFAGVISMQG* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g3175 374 SMART tify_2 196 231 IPR010399 -
Vra7g3175 374 PANTHER PROTEIN TIFY 7 13 362 - -
Vra7g3175 374 Pfam Jas motif 328 352 IPR018467 -
Vra7g3175 374 MobiDBLite consensus disorder prediction 262 294 - -
Vra7g3175 374 MobiDBLite consensus disorder prediction 253 294 - -
Vra7g3175 374 MobiDBLite consensus disorder prediction 85 107 - -
Vra7g3175 374 Pfam tify domain 197 230 IPR010399 -
Vra7g3175 374 ProSiteProfiles Tify domain profile. 196 231 IPR010399 -
Vra7g3175 374 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 13 362 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g3175 Vra-Chr7 51455302 51458846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g3175 38 361 Tify Gene Family AT3G17860 34.783 5.59e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra7g3175 tify 1.9e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g3175 7 51455302 51458846 Vra7g3175 7 51455302 51458846 ECH