Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2812 ATGTCGCATTCCTCCGGCTTGGATGCCTTCGCGGATCGATTCCGCCACGCGCTCAGCTGCAACAACGATGCCGCCAACATTAACAAGCCTGACTTCCGAGAACTCGATCTGGGTTCCCCGGTCTCGCCATTGCGCACCACGCGCGCACCCGCCGCGAGTACCAGCTCAAGCTCGTCTGGGTCCTTCTCGGGTCGAACCGGGACCAACCAGGTTCCCCGAAAGCCTGAATCTTCGCTCACCAATAGTAACACTAACAACAGCAGTAGTAGCAACCACAACAACAACAACTCCGGCGAGCTTTCTGGTTCGAGTGAGAACAGCCCCACCGCCCGTGGTTTCAAACCGGGCCATACGAGATCCGACTCTGGATCCGCGCCGGCGCCGCTGATATACTCCGGCCAGACTGCTACTTCGCCGGCGATGAATGTTCTCCCCACCGGGAACATCTGCCCCTCCGGGAAGATCTTGAAGACGGGGATGGGGATGGTGGCGAATCGGAGTAGTAGAAGCGATGTTTTGGGGTCCGGCATGGGGAACTACGGCCACGGGAGCATAATGCGCGGCGGCGGGAAGGCGGAGCCGGTGAGCTCACGCGGCGTTGGCGGCAATGAGGCAGTGAAGAGAGGTGGGCACGTGCAGGGTGTGGATCCGGAGGAGTTGAAGAGATTGGGGAATGAATGTTATAAAAGAGGGAACTTTGCTGATGCGTTAAGTCTTTACGATCGCGCTATTGCGATGTCGCCGGCTAGTGTCGCTTACCGGAGCAACCGCGCGGCGGCGCTGACCGGGCTGGGACGTCTGGGTGAGGCCGTGAGGGAATGCGAGGAGGCTGTGAGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAGGTCGAGAATGCTAGGAAGCACCTTTGCTACCCTGGGATGCAGCCAGATCCGTCTGAGATGCAGAGGTTGCAAGTGGTGGAAAAGCATGTAAGCAAATGCGGGGATGTGAGGAGGATAGGGGATTGGAAGAGTGTTCTGAGGGAGGTGGATGCTGCTGTTGCTGCTGGAGCGGATTCTTCTCCTCAGCTCTTTATGTGTAGAGCAGAGGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTTGTCCCATATACCAAAATCAGAGTTGCACACCAGTTCAACTTCTCAGGCAAGATTTTTCGGGATGCTTTATGAGGCGTATTTCTATTTTGTGAGAGCACAGATTGAGATGGCATTGGGAAGGTTCGAGAACGCAGTTACAGCTGCTGAGAAAGCGAGTCAGATTGATCCACGGAATGTTGAAGTTGCTGTTTTGCTGAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGTGGCAATGATCTCTTTAAATCTGAAAGGTACACCGAAGCTTGCTCGGCGTACGGAGAAGGTCTGAGACTGGATCCTTCCAATTCTGTGCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGGCAGTGGGAAAGGTCAATTGAAGACTCCAACCAAGCTTTGAACATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAACGGTGGGAGGAAGCAGTAAAAGATTATGAGGTGTTGAGGAGAGAACTTCCAAACGATAACGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTGAAGAAATCACGTGGGGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTGGAGCAGTTTAGAGCTGCAATATCTTCACCAGGTGTATGTGTTGTCCATTTTGAAGTTGCATCTAATTCGCAAAGCAAACAGATATCACCGTTTGTGGATACACTATGCGGTCGATATCCATCCATCAACTTCCTCAAGGTGGACATTGAAGAAAGCCGAGCAGTTGCAAAAGCGGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGGAGCAGAGTGAAGGAAATGGTTTGCCCAAGTCGTGAGATGTTGGAACACTCGGTGAGGCATTACAGCTTTTAG 2073 0.5162 MSHSSGLDAFADRFRHALSCNNDAANINKPDFRELDLGSPVSPLRTTRAPAASTSSSSSGSFSGRTGTNQVPRKPESSLTNSNTNNSSSSNHNNNNSGELSGSSENSPTARGFKPGHTRSDSGSAPAPLIYSGQTATSPAMNVLPTGNICPSGKILKTGMGMVANRSSRSDVLGSGMGNYGHGSIMRGGGKAEPVSSRGVGGNEAVKRGGHVQGVDPEELKRLGNECYKRGNFADALSLYDRAIAMSPASVAYRSNRAAALTGLGRLGEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYPGMQPDPSEMQRLQVVEKHVSKCGDVRRIGDWKSVLREVDAAVAAGADSSPQLFMCRAEAFLKLHQIDDAETVLLSHIPKSELHTSSTSQARFFGMLYEAYFYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALNIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISSPGVCVVHFEVASNSQSKQISPFVDTLCGRYPSINFLKVDIEESRAVAKAENVRIVPTFKIYKNGSRVKEMVCPSREMLEHSVRHYSF* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2812 690 SUPERFAMILY Thioredoxin-like 493 688 IPR036249 -
Vra5g2812 690 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515
Vra5g2812 690 ProSiteProfiles TPR repeat profile. 490 523 IPR019734 GO:0005515
Vra5g2812 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 9 688 - -
Vra5g2812 690 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 9 688 IPR044534 -
Vra5g2812 690 MobiDBLite consensus disorder prediction 46 113 - -
Vra5g2812 690 Pfam Thioredoxin 595 680 IPR013766 -
Vra5g2812 690 Gene3D Tetratricopeptide repeat domain 215 576 IPR011990 GO:0005515
Vra5g2812 690 SMART tpr_5 251 284 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 524 557 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 217 250 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 456 489 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 490 523 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 410 443 IPR019734 GO:0005515
Vra5g2812 690 SMART tpr_5 361 394 IPR019734 GO:0005515
Vra5g2812 690 Gene3D Glutaredoxin 583 689 - -
Vra5g2812 690 MobiDBLite consensus disorder prediction 24 133 - -
Vra5g2812 690 CDD TRX_family 595 679 - -
Vra5g2812 690 Pfam Tetratricopeptide repeat 412 443 IPR019734 GO:0005515
Vra5g2812 690 SUPERFAMILY TPR-like 217 446 IPR011990 GO:0005515
Vra5g2812 690 MobiDBLite consensus disorder prediction 184 217 - -
Vra5g2812 690 ProSiteProfiles TPR repeat profile. 410 443 IPR019734 GO:0005515
Vra5g2812 690 Pfam Tetratricopeptide repeat 223 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2812 Vra-Chr5 35674910 35678398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2812 231 554 Glycosyltransferase AT3G04240 21.581 1.65e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2812 5 35674910 35678398 Vra5g2812 5 35674910 35678398 ECH
Vra5g2812 5 35674910 35678398 Vra2g1214 2 16909233 16913345 PCT