Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1379 ATGGGAAGGGGAAGAGTGGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGAAACGGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGATGCCGAGCTTGCTCTCATCATCTTCTCCACTAGAGGAAAGTTGTACGAGTTTTGCAGCACTTCAAGCATGCTGAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAGGAAGCCTTGGTATTGGAGTTAAGCAGTCAACAAGAATATTTGAAGCTGAAAGCACGGTATGAAGCTCTACAACGTTTTCAAAGGAACCTTATGGGAGAAGATCTTGGCCCTCTAAGCAGCAATGAGCTTGAATCACTTGAAAGGCAGCTAGATTCGTCTTTGAAGCAAATCAGATCAACAAGGACCCAATTCATGCTGGATCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGAGTATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGATATGGGTTATGACCGCCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTACAAATGGGATATAGACCTGATCCAGTATCAGTGATAACAGGAGGCCAGAGCATGAACAATTTCATGGGAGGATGGTTACCATGA 732 0.444 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAELALIIFSTRGKLYEFCSTSSMLKTLERYQKCNYGAPEANASTKEALVLELSSQQEYLKLKARYEALQRFQRNLMGEDLGPLSSNELESLERQLDSSLKQIRSTRTQFMLDQLSDSQRKEHLLGEANTALRQRLEEYQINQFQLNPSGEDMGYDRHPGQHQGDALFQPLECEPTLQMGYRPDPVSVITGGQSMNNFMGGWLP* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1379 243 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Vra2g1379 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 230 - -
Vra2g1379 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Vra2g1379 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 230 - -
Vra2g1379 243 Coils Coil 128 148 - -
Vra2g1379 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra2g1379 243 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra2g1379 243 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra2g1379 243 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Vra2g1379 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1379 Vra-Chr2 22093415 22097431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1379 1 243 MADS-box Gene Family AT1G24260 69.512 4.29e-110 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra2g1379 K-box 1.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1379 2 22093415 22097431 Vra2g1379 2 22093415 22097431 ECH