Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1313 ATGGAAACCCCGTCTTCGAATGGATCGGTTTCGAAGCGTTCACTGAGGAGGAAAGTGAATTTGAGAAACTATGATGAGGATCTGATGGATGAGTTGTTTGAGAAGCAGTTGGGGGGTGGTTTGAAGAAGAGGAGTAGGACCAAAGAGGATTTGGAGAAGGAGACTGAGACTGAGGCTATGATTGCGATGTCGCTTGGTTTCCCAATTGATGCTTTGCTCGATGAGGAGGTTAGGGCTGGGGTTGTGAGGCAGTTGGGCGGGAAGGAGCAGAATGATTACATAGTCATAAGGAATCATATATTGGCTTTGTGGAGGAGGGGGAATGTGAGGTTGTGGTTGAGTAAAGGGATGATTAGAGAAACTGTGAGTAATGAGTATGAGCATTTGATTAATTCTGCTTATGACTTCCTTTTGTACAATGGCTACATAAATTTTGGGGTTTCACCAGCATTTACTTCTCAATTGCCTGAGTCAAATGAGGGAACTGCTATTGTTATTGGTGCTGGCCTGGCAGGGTTGGCAGCTGCGAGGCAGCTGTTGTTGTTTGGTTACAAGGTCGTGGTTTTGGAAGGCAGAAGTCGGCCTGGTGGACGAGTTTATACTCAGAAGGTAGGGCGTGATGGGAAATTTTCTGCCATTGATCTTGGTGGGAGTATTATCACTGGCATTCATGCTAACCCTTTGGGGGTTCTGGCTAGACAACTTTCTATACCACTTCATAAAGTCAGAGATAATTGCCCTTTATATAAGCCAAATGGGGCACCGGTTGATACAGAAATGGATGCAAGGGTTGAATTTGTGTTTAATAGGTTGCTTGACAAGGTTATGGAGCTGAGGCAAATTATGGGTGGGTTCGCTAGTGATACTTCACTTGGTTCAGTCTTGGAGACGCTCAGGCAGTTGTATAGTGTGACCAAAAGTACTGATGAGAGGCAGTTGTTTGATTGGCATCTTGCAAATTTGGAATATGCAAATGCTGGGTGCCTTTCAAATCTTTCGGCTGCCTATTGGGATCAGGATGATCCTTATGAAATGAGTGGTGATCACTGCTTTCTTGCTGGAGGGAATACGAGGTTGATAAAAGCTCTATGTGAAGGGGTTCCTATTTTCTATGGAAAGACGGTCAATACTATAAAATATGGAGATGAGGGTGTTGAGGTCATTGCCGGGGACCAAGTCTTTCAAGCAGATATTGCCTTATGTACTGTGCCCCTTGGAGTTCTGAAAAAGAAGGCCATCAATTTTGAACCTGAATTACCTGCAAGGAAACTGGCAGCAATTGAGAGGATGGGGTTTGGGCTGCTGAACAAAGTTGCTATGGTTTTTCCTTATGTATTTTGGGGGGAAGATCAAGACACATTTGGATGTCTCAATGAATATAGTCATCAACGTGGGGAGTTTTTCCTATTTTACTGTTACCACACAGTTTCTGGAGGCCCAGCACTTGTTGCGCTGGTGGCTGGGGAAGCAGCACAAGTCTTTGAATCCACAAATCCTTCCATTTTGCTCCATCGTGTGTTGACTGTTTTAAAAGGGATATTTCATCCTAAAGGTATTGTTGTGCCTCACCCAATTCAATCAATTTGTACAAGATGGGGAAGCGATCCCCTTTCTTACGGTTCCTACTCTCATGTTAGTGTGCATTCATCTGGTGATGATTATGATATTCTAGCCGAAAACGTGGGAAACAGACTGTTCTTTGCTGGTGAGGCCACAAGCAGGCAGTATCCAGCAACTATGCATGGTGCTTTCTTGAGTGGCTTGAGGGAAGCTTCACGCATATACAGATCATCACGTCTGCAAAACAGTACTAAGAAATATGGACCTAAGAATATTGGACCAAACCATGATATTCTGGTTGAATTATTTAAGAGGCCTGATTTTGAATGTGGGAAATTTGCTTTCATTTTTTATTCTTCATCAGAAAGCCTGCCCTCAATGGGTCTTCTGCAGGTAACTTTTGGTGACACAGAAGAAAGTCATGAGGAGTTGTTATACAACTATCAGAATTCTATTAAGTGGCCATTACAGCTGTACACTGTATTATCCCGTGAGCAAGCCCAGCAGCTACAACTAGTTGAGGGAGGTGATGAAAGCAGGCTATCATTTTTGGTCAAAAGCCTTGGCTTGAAGCTCATGGGACCAAGTGCCTTGTTTTCAGCAGGTAACACATTAGTAGCTAACATTGCATATTCTCGAAAAGGCCGCGGGAGGAACCGCTTAATTACTTGTTAA 2235 0.4371 METPSSNGSVSKRSLRRKVNLRNYDEDLMDELFEKQLGGGLKKRSRTKEDLEKETETEAMIAMSLGFPIDALLDEEVRAGVVRQLGGKEQNDYIVIRNHILALWRRGNVRLWLSKGMIRETVSNEYEHLINSAYDFLLYNGYINFGVSPAFTSQLPESNEGTAIVIGAGLAGLAAARQLLLFGYKVVVLEGRSRPGGRVYTQKVGRDGKFSAIDLGGSIITGIHANPLGVLARQLSIPLHKVRDNCPLYKPNGAPVDTEMDARVEFVFNRLLDKVMELRQIMGGFASDTSLGSVLETLRQLYSVTKSTDERQLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMSGDHCFLAGGNTRLIKALCEGVPIFYGKTVNTIKYGDEGVEVIAGDQVFQADIALCTVPLGVLKKKAINFEPELPARKLAAIERMGFGLLNKVAMVFPYVFWGEDQDTFGCLNEYSHQRGEFFLFYCYHTVSGGPALVALVAGEAAQVFESTNPSILLHRVLTVLKGIFHPKGIVVPHPIQSICTRWGSDPLSYGSYSHVSVHSSGDDYDILAENVGNRLFFAGEATSRQYPATMHGAFLSGLREASRIYRSSRLQNSTKKYGPKNIGPNHDILVELFKRPDFECGKFAFIFYSSSESLPSMGLLQVTFGDTEESHEELLYNYQNSIKWPLQLYTVLSREQAQQLQLVEGGDESRLSFLVKSLGLKLMGPSALFSAGNTLVANIAYSRKGRGRNRLITC* 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1313 744 Gene3D - 164 593 IPR036188 -
Vra2g1313 744 PANTHER FLAVIN MONOAMINE OXIDASE 37 736 - -
Vra2g1313 744 Gene3D - 57 156 IPR036388 -
Vra2g1313 744 ProSiteProfiles SWIRM domain profile. 52 154 IPR007526 GO:0005515
Vra2g1313 744 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 37 736 - -
Vra2g1313 744 SUPERFAMILY FAD-linked reductases, C-terminal domain 431 544 - -
Vra2g1313 744 Pfam Flavin containing amine oxidoreductase 170 594 IPR002937 GO:0016491
Vra2g1313 744 SUPERFAMILY Homeodomain-like 54 157 IPR009057 -
Vra2g1313 744 Gene3D - 245 550 - -
Vra2g1313 744 Pfam SWIRM domain 70 145 IPR007526 GO:0005515
Vra2g1313 744 SUPERFAMILY FAD/NAD(P)-binding domain 162 596 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1313 Vra-Chr2 20820629 20837490 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Vra2g1313 Amino_oxidase 6.4e-87 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1313 2 20820629 20837490 Vra2g1313 2 20820629 20837490 ECH