Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1308 ATGAACGAGAAGGCCAACGTTTCCAAAGAGCTCAACGCCAAACACAAGAAGATATTAGAAGGACTTCTTAAACTACCAGAGAATAAGGAGTGTGCTGACTGCAAAGCTAAGGGCCCAAGATGGGCTAGTGTCAATCTTGGCATTTTTATATGCATGCAGTGTTCTGGTATACATAGAAGTCTTGGGGTACACATATCAAAGGTTCGCTCAGCAACTTTGGACACTTGGCTTCCAGAGCAGGTTGCATTCATTCAACATATGGGAAATGAGAAGGCAAACAATTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAGGAATGAGAAACCAAAATCACCTTCTAGTTTTCGAGAAGAGAAAAGGCCCATGGAAAGGGTTGGCCATAGTCATGCAGTTGTGTCTGAGAATACTTTTGAGGATAGGAAGAAAATCAAACCTTCAAATGCTATTCCTGCTACAAGAATTTGTGTTCCTGCTCCTCCCAGAGGGCCTGAACTGGTAACTCCCGTGGGAAAACCTCAACATGTTGATAAAGCAGAACCTGTTTCACCACCATCACAAGTTGAAACTTCAAAACCGACTACTGACACAAAACAAAACTCCCCTCCAAAAGTTGACTTTTCTACGGATCTTTTTGACATGTTATCTATGGATGAACCAAGTGAAAAGGGCTCAGGTGCAGCTGAAGCTATTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTCCAGAGGCATTGCCAGCTGTGAAGAATGATACCACAAAATCAGTTGACAGTAGACCTCAGACCACTTCTGGAATTGAGGATTTATTTAAAGACTCACCTTCGGTTACAACAAGTTCAACTCCAGAAAACCCACAAAAAGATGTAAAAAATGATATCATGAGCCTCTTTGAGAAGGGAAATGTTGTGTCTCCATTTGCAATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGACTCTTCTAATGGCTGCTGCTGCTAAATCTGGTGGTGTGGATCCCAAGTACTTGGCCAGCTTACAACAACAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCCAGTGGGGATTCCAAAAACCCAGCTGGCATACAAAAACCTGGATCCAATATTCCTGTCCAAAGTTGGCCAGCTGCTGGCTACCCAGTCCCTGGTATAATGCCCATGGGAAATCAGGAAGAGTTGCAAAAACTAATGCAGACCATGAACTTGACTGCAGCGCATTCAGCAGGGAGTTCAGTTCAGTATCCACAATCTAGTTACTATCCAATGGGGCAAGTTGCTCCAGTCAATGGTTCGTCTACAACGGGTGGAGCAAGTAAAGACAGAGAGTCATCAGCATATCCAATATCATCGACCACTTCAAAGACAGGAAGCGATTATGATTTCTCCTCTTTAACACAAGGAATGTTTGCAAAGCACTAA 1491 0.4333 MNEKANVSKELNAKHKKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQHMGNEKANNYWEAELPPNYDRVGIENFIRAKYEEKRWVARNEKPKSPSSFREEKRPMERVGHSHAVVSENTFEDRKKIKPSNAIPATRICVPAPPRGPELVTPVGKPQHVDKAEPVSPPSQVETSKPTTDTKQNSPPKVDFSTDLFDMLSMDEPSEKGSGAAEAIADDNNWAGFQSAPEALPAVKNDTTKSVDSRPQTTSGIEDLFKDSPSVTTSSTPENPQKDVKNDIMSLFEKGNVVSPFAMHQQQLAMLAQQQTLLMAAAAKSGGVDPKYLASLQQQSLLMAAAAKSASGDSKNPAGIQKPGSNIPVQSWPAAGYPVPGIMPMGNQEELQKLMQTMNLTAAHSAGSSVQYPQSSYYPMGQVAPVNGSSTTGGASKDRESSAYPISSTTSKTGSDYDFSSLTQGMFAKH* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1308 496 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Vra2g1308 496 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vra2g1308 496 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vra2g1308 496 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vra2g1308 496 CDD ArfGap 19 117 - -
Vra2g1308 496 MobiDBLite consensus disorder prediction 203 225 - -
Vra2g1308 496 PANTHER ARF GTPASE ACTIVATOR 1 364 - -
Vra2g1308 496 PANTHER ARF GTPASE ACTIVATOR 363 495 - -
Vra2g1308 496 MobiDBLite consensus disorder prediction 272 309 - -
Vra2g1308 496 MobiDBLite consensus disorder prediction 126 146 - -
Vra2g1308 496 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Vra2g1308 496 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Vra2g1308 496 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Vra2g1308 496 MobiDBLite consensus disorder prediction 264 310 - -
Vra2g1308 496 MobiDBLite consensus disorder prediction 454 481 - -
Vra2g1308 496 MobiDBLite consensus disorder prediction 172 227 - -
Vra2g1308 496 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 363 495 IPR044520 GO:0005096
Vra2g1308 496 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 364 IPR044520 GO:0005096
Vra2g1308 496 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1308 Vra-Chr2 20751382 20762889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1308 16 123 C2H2 Transcription Factor Family AT4G05330 47.414 8.63e-29 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1308 2 20751382 20762889 Vra2g1308 2 20751382 20762889 ECH