Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1265 ATGGAGCCTGTGGTCCACACCCTTCTTTTCTGCCCTTCTGCTTCCTATAAACTCCCTCTTTCACTTCATTGCTCCAAAAAACTTCTTCCTCTCTGCAACACCCTTTTGCACACAATGGAGAGGAAGAGATCACTGCTTGAAAGGGTCAGAAAGAATGTGGAAGAGGAACTGGAGAATGAACTGGAGGAGGAGGATGAAACTGGACCTTCTCTCACTGAAGAAGAGAAAAAAAGAGGGCTTGGTAGCAGCAATACTGGTGGTGGGAGAAGAGCCTCAACTGGGGCTGCTGCTGCTGCTTCTGGTGGAGGTGTTTCTCCACCTTCATGTCAAGCAGAGAGATGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCACAAGGTCTGTGAGTTTCACTCCAAAGCACCTGTTGTGGTGGTTGCAGGTCTCAGACAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGATTTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAATGAACGGCGCCGGAAAAGCAACCCTGAGGCTGCGAATGAGGGCAGCAAAGGCCATCAGCACCCTAAGGAAACAACACACTGCAGAATTCAGATGAACCTTCCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 669 0.5022 MEPVVHTLLFCPSASYKLPLSLHCSKKLLPLCNTLLHTMERKRSLLERVRKNVEEELENELEEEDETGPSLTEEEKKRGLGSSNTGGGRRASTGAAAAASGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAANEGSKGHQHPKETTHCRIQMNLPGSSGYKSFNIR* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1265 222 Coils Coil 36 74 - -
Vra2g1265 222 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 200 - -
Vra2g1265 222 SUPERFAMILY SBT domain 107 187 IPR036893 GO:0003677|GO:0005634
Vra2g1265 222 Pfam SBP domain 109 182 IPR004333 GO:0003677
Vra2g1265 222 ProSiteProfiles Zinc finger SBP-type profile. 106 183 IPR004333 GO:0003677
Vra2g1265 222 MobiDBLite consensus disorder prediction 179 202 - -
Vra2g1265 222 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 200 IPR044817 GO:0003677
Vra2g1265 222 MobiDBLite consensus disorder prediction 56 112 - -
Vra2g1265 222 MobiDBLite consensus disorder prediction 173 222 - -
Vra2g1265 222 MobiDBLite consensus disorder prediction 206 222 - -
Vra2g1265 222 Gene3D - 99 170 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1265 Vra-Chr2 18305881 18307550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1265 88 192 SBP-box Gene Family AT1G53160 64.151 1.20e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vra2g1265 SBP 1.6e-31 No_clan