Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1227 ATGTCTGAGGTGAAGATGATCGGGGTGGTGGGCGGTGGCCAAATGGGATCGGGAATAGCGCAAGTTGCTGCCATGCACGGCGTGGACGTTGTCCTTCACGACCTCGATCACCGAGCCCTTTCCATAGCCTCGTCTTCCATCTCCTCCTCAATCGACCGTTTTGTTTCCAAAGGAGCCCTTTCTAAGGCGGCGGGAGTTGAGGTGTTTAAACGACTGCGTTTTACCACGAATTTAGAGGACTTTCACGCGGCGGATTTTATAATCGAAGCGATTGTGGAATCCGAAGACGTGAAGAAGAGTTTATTCGTTAAATTGGACAAGATTGCGAAGAGTTCTGCGATTTTGGCTTCAAACACGAGTTCTATCTCCATCACGCGTATAGCGTCCTCTACTACCAGGCCGCGTCAGGTGATCGGAATGCATTTTATGAACCCTCCGCCTCTGAAGAAATTGATAGAGATTATACGGGGAGCAGACACTTCAGACGAGACATTTGCTACTACGAAAGCATTGTCAGAGAGGTTGGGCAAGGTAGTAATTACCTCCCAGGATTATTCAGGTTTCATAGTGAATCGAATCCTTATGCCTATGATAAATGAAGCCTTTTTTACTCTCTACAATGGGGTTGGAACCAAAGAGGATATTGACAGAGGAATGAAGCTAGGTACTAGCCATCCAATGGGTCCTTTAGAGCTTGCAGACTTCATTGGATTGGATGTGTGCTTGTCAATAATGAGAGTTCTTCATGCTGGTCTTGGAGACAATAAATATGCACCATGCCCTCTCCTTGTGCAGTACGTTGATGCTGGAAGACTTGGAAGAAAGCGAGGTCTTCAAAACCTCACTTTTTCCATATGTCTGACTGTTGGGATGGTGCAGACTGTTCAAATACGCTCTGTATTATGCAGACAAAACAAAAGAAAGTTTAGAAGAGGTTTTCTTTTGATGACGATGGAGTGA 960 0.4573 MSEVKMIGVVGGGQMGSGIAQVAAMHGVDVVLHDLDHRALSIASSSISSSIDRFVSKGALSKAAGVEVFKRLRFTTNLEDFHAADFIIEAIVESEDVKKSLFVKLDKIAKSSAILASNTSSISITRIASSTTRPRQVIGMHFMNPPPLKKLIEIIRGADTSDETFATTKALSERLGKVVITSQDYSGFIVNRILMPMINEAFFTLYNGVGTKEDIDRGMKLGTSHPMGPLELADFIGLDVCLSIMRVLHAGLGDNKYAPCPLLVQYVDAGRLGRKRGLQNLTFSICLTVGMVQTVQIRSVLCRQNKRKFRRGFLLMTME* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1227 319 Gene3D - 3 189 - -
Vra2g1227 319 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 277 - -
Vra2g1227 319 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 185 IPR036291 -
Vra2g1227 319 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 187 277 IPR008927 -
Vra2g1227 319 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 7 184 IPR006176 GO:0006631|GO:0070403
Vra2g1227 319 PIRSF HCDH 2 284 IPR022694 GO:0006631|GO:0016616|GO:0070403
Vra2g1227 319 Pfam 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 187 277 IPR006108 GO:0006631|GO:0016491|GO:0016616
Vra2g1227 319 ProSitePatterns 3-hydroxyacyl-CoA dehydrogenase signature. 184 209 IPR006180 GO:0006631|GO:0016491|GO:0016616
Vra2g1227 319 PANTHER 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN 4 277 - -
Vra2g1227 319 Gene3D - 190 280 IPR013328 GO:0016491
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1227 62 278 Acyl Lipid Metabolism Gene Families AT3G15290 76.498 1.93e-124 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1227 2 17189252 17210904 Vra2g1227 2 17189252 17210904 ECH