Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1226 ATGGAATTGCATAGATATTGCCGTATGGCTTTTGTGCAGTGGAGTTTCCTGGCTTGGTTTATTTGCTTTTCTGTGGGACTTGAGACCCTAGCCAATTCTTGTGACCAGCATGATTTGTTGGGCCTGAAGGAATTTGCAGGCAACCTTACAAAAGGGTCTATCATCACAGCATGGTCAGATGATGTTTTCTGCTGCAAATGGGTTGGAGTTGTTTGTGAAGATGTGGTTGATGGAGGTAGTAGAGTGTCCAAGTTGATTCTACCTGGAATGGGTCTTAACGGCACAATTTCAAGGTCTTTAGCTTCTCTGGATCAACTGAAAGTGCTTGATATTTCGTTCAATCGTCTCCAAGGTGGATTGCCTTCCGAGTTCTCTAATTTGAAGCAGTTAGAAGTTCTTGATTTGAGCCATAATATTCTGTCTGGACCACTTGTTGGGACAGTCTCTGGTTTGCAATCCCTTCAGATACTGAATATTTCTAGCAATTTATTTGTTGGAGACCTCTTCCAATTTGGGGGATTACAACATCTCGTTGCTCTCAACATAAGCAACAATTCATTCACTGGCCAGTTCAATTCTCAAATTTGCAGCTTCTCCAAGGGTATTCATATTCTTGATATATCACAAAATAATTTTTCTGGTGGTCTTGAATGGTTGGCAAACTGCAGCACATCTGTCCAAGAGTTACATTTGGATTCCAATTTTTTTACTGGCTATCTTCCTGATTCCTTGTATTCAATGTCAGCATTGGAGCAGCTCTCAGTCTCTATGAACAACCTCTCCGGTCAGTTAAGCATGAAGCTAAGTAACCTCTCAAACCTAAAATCTCTAATAATTTCTGGAAATCGGTTTTCTGGGGAGCTCCCTAATGTTTTTGGGAATCTTTCGGACCTTGAACAGCTAATAGGGCACTCCAATTCATTTTCTGGATCATTACCTTCTACCTTGGCCTTATGCTCAAAACTTCAAGTTCTTGATCTTCGGAATAATTCTTTGACAGGTTCTGTTAGCCTTAATTTCACTGGGTTGTCTAATCTTTCCACGTTGGACCTTGGTAGCAATCATTTTAATGGACCCCTTCCAAATTCCGTGTTCAATTGCCATAAATTGACAATGTTAAGCCTTGCAAAAAATGAATTAACAGGCCAAATCCCTGCGAGTTATGCGAACCTCACTTCACTTTTGACTCTGTCTCTGTCAAACAACAGCTTTGAGAACCTATCTGGGGCGCTTTATGTACTGCAGCACTGCAAAAATCTCACAACTCTTATCCTCACAAAGAATTTCCGTGGTGAAGAAATTTCAGAAAATTTAACGGTAAGCTTCAAGAGCCTTGTGGTGTTAGCACTTGGAAATTGTGGTCTCAAAGGCCGTATTCCTGTTTGGCTGTTAAATTGCTCGAAATTGGAAGTTCTTGATCTGTCATGGAACCATTTGGAAGGCAGTGTCCCTTCTTGGATTGGTTGGATGGATCATCTGTTCTACTTGGATTTGTCAAATAATTCTCTTACTGGAGAAATACCAAAAGGTTTGACAGAGCTGAAGGGCCTCATATCCCTAAATTATCATATATCAAATCTCTTTGCATCTGCTGCTATTCCTCTCTATGTCAAGAGAAACAAGAGTGCTAATGGGTTGCAATATAACCATGCTTCGAGTTTCCCTCCATCAATATACTTGAGCAATAACAGATTAAGTGGAACAATATGGCCTGAAATAGGTCGTTTGAGAGAACTTCATATCTTAGATTTAAGCAGGAACAACATCACCGGCACAATTCCCAGCTCTATCTCTGAGATGAAGAATTTGGAAACATTAGACTTATCTAATAATAATCTATACGGAACTATTCCTCCTTCATTTAACAACCTCACATTCTTGTCTAAGTTCAGCGTGGCATATAATCACTTGTGGGGAACAATTCCAGCTGGGGGACAATTTTCAAGTTTCCCAAATTCAAGTTTTGAGGGCAATATGGGTCTTTGTGGGGAAACATACAATCATTGTAACAATGAAAAAAATGTCGACATTTCCACTCCTTCCTCGGGTAAATTCGGTAAAAGCAGTGTCCTTGGCATCACAATTGGTTCTGGAGTGGGCCTTGCACTACTTATTGCAGTTATTCTGCTAAGAATGTCAAAGAAGGATGAGGATAAACCGGTGGATAACTTTGATGAGGAGCTTAGCTGGCCAAACAGGGTACCTGAAGCAGTTGTTTCTTCAAAATTGGTTCTTTTTCAGAATTCAGATTGCAAGGATCTCACAGTTGAAGATTTGATAAAATCTACCAACAACTTTAACCAAGAAAACATAATTGGTTGTGGTGGATTTGGCCTTGTCTACAAGGCAAATCTTCAAAATGGCAGAAAGGTAGCTGTGAAGAAACTTTCGGGATACTGTGGTCAGGTGGAACGAGAATTCCAAGCAGAAGTTGAGGCCCTCTCTAGAGCTCAACATAAGAACCTTGTTTCACTCAAAGGTTATTGTCAGCATGCTAATGACAGATTGTTAATTTACTCCTACTTGGAGAATGGAAGCCTTGACTATTGGTTGCATGAAAGTGAGGATGGAAATTCAGCTCTAAAATGGAATGTAAGACTCAACATAGCTCAAGGTGCAGCTCATGGACTAGCTTATTTGCACAAGGAGTGTGAACCACATATTGTGCACAGAGATATTAAATCTAGCAACATACTTTTGGATGATAAATTCGAAGCTTATTTGGCTGATTTTGGTCTTTCAAGGCTACTTCAACCCTATGATACACATGTTTCAACAGATTTAGTTGGAACTTTAGGATATATTCCTCCAGAATATAGTCAAGCACTGAAAGCAACATTCAAAGGTGATATTTATAGCTTTGGTGTTGTTCTTGTTGAGCTTCTCACTGGTCGAAGGCCAGTAGAAGTCATTGTGGGGCAATGCAGCAGGAATCTAGTGTCTTGGGTGTTTCAGATGAAATCTGAAAATAGGGATCAAGAAATTTTTGATTCAGTCATTTGGCATAAGGATATTGAGAAACAACTCTTAGAGGTACTAGCTATTGCTTGTAAATGTATAGATGCAGATCCAAGGCAGAGACCCCATATTGAATTAGTTGTTTCATGGCTTGATGGTGTAGGATTTGATGGCTCTGAATAG 3141 0.3989 MELHRYCRMAFVQWSFLAWFICFSVGLETLANSCDQHDLLGLKEFAGNLTKGSIITAWSDDVFCCKWVGVVCEDVVDGGSRVSKLILPGMGLNGTISRSLASLDQLKVLDISFNRLQGGLPSEFSNLKQLEVLDLSHNILSGPLVGTVSGLQSLQILNISSNLFVGDLFQFGGLQHLVALNISNNSFTGQFNSQICSFSKGIHILDISQNNFSGGLEWLANCSTSVQELHLDSNFFTGYLPDSLYSMSALEQLSVSMNNLSGQLSMKLSNLSNLKSLIISGNRFSGELPNVFGNLSDLEQLIGHSNSFSGSLPSTLALCSKLQVLDLRNNSLTGSVSLNFTGLSNLSTLDLGSNHFNGPLPNSVFNCHKLTMLSLAKNELTGQIPASYANLTSLLTLSLSNNSFENLSGALYVLQHCKNLTTLILTKNFRGEEISENLTVSFKSLVVLALGNCGLKGRIPVWLLNCSKLEVLDLSWNHLEGSVPSWIGWMDHLFYLDLSNNSLTGEIPKGLTELKGLISLNYHISNLFASAAIPLYVKRNKSANGLQYNHASSFPPSIYLSNNRLSGTIWPEIGRLRELHILDLSRNNITGTIPSSISEMKNLETLDLSNNNLYGTIPPSFNNLTFLSKFSVAYNHLWGTIPAGGQFSSFPNSSFEGNMGLCGETYNHCNNEKNVDISTPSSGKFGKSSVLGITIGSGVGLALLIAVILLRMSKKDEDKPVDNFDEELSWPNRVPEAVVSSKLVLFQNSDCKDLTVEDLIKSTNNFNQENIIGCGGFGLVYKANLQNGRKVAVKKLSGYCGQVEREFQAEVEALSRAQHKNLVSLKGYCQHANDRLLIYSYLENGSLDYWLHESEDGNSALKWNVRLNIAQGAAHGLAYLHKECEPHIVHRDIKSSNILLDDKFEAYLADFGLSRLLQPYDTHVSTDLVGTLGYIPPEYSQALKATFKGDIYSFGVVLVELLTGRRPVEVIVGQCSRNLVSWVFQMKSENRDQEIFDSVIWHKDIEKQLLEVLAIACKCIDADPRQRPHIELVVSWLDGVGFDGSE* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1226 1046 PRINTS Leucine-rich repeat signature 493 506 - -
Vra2g1226 1046 PRINTS Leucine-rich repeat signature 600 613 - -
Vra2g1226 1046 SMART LRR_sd22_2 600 626 - -
Vra2g1226 1046 SMART LRR_sd22_2 103 129 - -
Vra2g1226 1046 SMART LRR_sd22_2 247 273 - -
Vra2g1226 1046 SMART LRR_sd22_2 490 513 - -
Vra2g1226 1046 SMART LRR_sd22_2 319 348 - -
Vra2g1226 1046 SMART LRR_sd22_2 576 599 - -
Vra2g1226 1046 SMART LRR_sd22_2 391 409 - -
Vra2g1226 1046 SUPERFAMILY RNI-like 224 526 - -
Vra2g1226 1046 ProSiteProfiles Protein kinase domain profile. 766 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1226 1046 Gene3D Ribonuclease Inhibitor 33 170 IPR032675 -
Vra2g1226 1046 ProSiteProfiles Leucine-rich repeat profile. 602 624 IPR001611 GO:0005515
Vra2g1226 1046 SUPERFAMILY L domain-like 53 301 - -
Vra2g1226 1046 Gene3D Transferase(Phosphotransferase) domain 1 842 1041 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 279 435 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 559 612 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 613 1040 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 445 532 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 171 280 - -
Vra2g1226 1046 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 162 - -
Vra2g1226 1046 SUPERFAMILY L domain-like 546 663 - -
Vra2g1226 1046 SMART serkin_6 766 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1226 1046 Pfam Protein kinase domain 767 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1226 1046 ProSitePatterns Serine/Threonine protein kinases active-site signature. 888 900 IPR008271 GO:0004672|GO:0006468
Vra2g1226 1046 CDD STKc_IRAK 772 1039 - -
Vra2g1226 1046 SMART LRR_typ_2 600 623 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 576 599 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 127 150 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 271 294 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 391 414 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 490 514 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 343 367 IPR003591 -
Vra2g1226 1046 SMART LRR_typ_2 103 126 IPR003591 -
Vra2g1226 1046 Pfam Leucine Rich Repeat 273 295 IPR001611 GO:0005515
Vra2g1226 1046 SUPERFAMILY Protein kinase-like (PK-like) 748 1037 IPR011009 -
Vra2g1226 1046 Gene3D Ribonuclease Inhibitor 263 362 IPR032675 -
Vra2g1226 1046 Gene3D Ribonuclease Inhibitor 171 262 IPR032675 -
Vra2g1226 1046 Pfam Leucine rich repeat 577 637 IPR001611 GO:0005515
Vra2g1226 1046 Pfam Leucine rich repeat 105 163 IPR001611 GO:0005515
Vra2g1226 1046 Pfam Leucine rich repeat 444 503 IPR001611 GO:0005515
Vra2g1226 1046 Pfam Leucine rich repeat 321 380 IPR001611 GO:0005515
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 171 280 - -
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 279 435 - -
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 559 612 - -
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 162 - -
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 613 1040 - -
Vra2g1226 1046 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 445 532 - -
Vra2g1226 1046 Gene3D Ribonuclease Inhibitor 369 677 IPR032675 -
Vra2g1226 1046 Gene3D Phosphorylase Kinase; domain 1 732 841 - -
Vra2g1226 1046 ProSitePatterns Protein kinases ATP-binding region signature. 772 795 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1226 Vra-Chr2 17180916 17185067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1226 65 1046 Receptor kinase-like Gene Family AT1G55610 34.707 1.12e-162 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vra2g1226 Pkinase 5.7e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1226 2 17180916 17185067 Vra2g1226 2 17180916 17185067 ECH