Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1225 ATGAATTTTTCAAAGATTGCGCGCTGTCTGTCGCGTTCATCAAGAAATTTATCACACGGTAATGGGAGATTGGGAAAGCTTGCAGGAATACCACGGATGAATGCGTGGTCTGATGGAGCGGAATCGGTATTCGGGTTTGTTAGGAGTTATGTTTCTTCTGCCAGTGCTTCCAGTCGCAGTGCCTTTTCCAGTTTGGTTGATTTTAAGTCTGTTGCTGCAAACCCTAGGGTTCGCCGATTGTTTTCCAGTGAAGCACCAAAGAAAAAGAATTATGAAAAGTTTTATCCCAAAGAAAAGAAGGAAGGTCCGAAGGAAAGTGACAAAAAATACGACTCTAAAGATGATCATGGATCTTATCGGGTGGCTATCAAGATTGAAGTTCATACTCTAATCTCCTCATTATTGGTTATGGGGCTATTCATTTCATACTTGTCTAGTCGTCCTCGTGAACAGCGGGAGATTAGCTTTCAGGAATTTAAAAATAAGCTCTTGGAACCGGGATTAGTAGACCATATTGCTGTCTCAAACAAATCGGTTGCCAAAGTATACTTAAGGAACTCTCCTCGCAACCAAACAGATAGTGAAGGAGTCCAAGGGACCCTGCCTGCAAAAGAATATGAAGGCCAGTATAAATATTACTTTAATATTGGAAGTGTTGAGTCTTTCGAGGAGAAGCTACAGGATGCGCAAGAAGATCTTGGCATTGACCCTCATGATTTTGTGCCTGTAACTTATTCGGCTGAGATGGTTTGGTACCAGGAACTGATGAGATTTGCTCCAACACTGTTATTGTTGGGATCTCTCCTGTACATGGGAAGGAGAATGCAAGGTGGACTCGGTGTTGGGGGAGGTGGTGGCAGTAAGGGTGCTCGTGGAATATTCAACATAGGAAAAGCCCATGTTACAAAAGTAGACAAAAATACTAAAAATAAGATATATTTTAAAGACGTTGCTGGCTGTGATGAGGCAAAACTTGAAATAATGGAGTTCGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTTTTGGTTGGTCCTCCGGGTACTGGAAAAACACTTTTAGCAAAAGCAACTGCTGGGGAGTCTGGGGTGCCATTTCTTTCTATATCTGGGTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCAAGGGTGAGAAATTTGTTTCAGGAAGCAAGGCAATGTGCTCCTAGTATAATATTTATTGATGAAATTGATGCGATTGGTCGAGCAAGGCGGCGTGGTGGTTTTTCACGCTCAAATGATGAGCGTGAAAATACATTGAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTTTTGGCAGGAACAAATAGACCTCATATCTTAGATAAGGCCCTTCTTAGGCCTGGGCGATTTGACCGCCAAATAGAAATTGACAAACCTGATATTAAAGGTCGTGACCAGATATTTCAAATCTACTTGAAGAAGATCAAACTTGACCATGAACCATCGTATTATTCTCAACGACTTGCATCCCTTACTCCTGGATTTGCTGGAGCAGACATTGCTAATGTCTGTAATGAAGCGGCTCTGATTGCTGCAAGAAGTGAGGTGACACAAGTCACAATGGACCATTTTGAGGCAGCAATCGATAGGATCATTGGTGGTTTGGAAAAGAAGAACAAGGTAATAAGCAAGGTGGAAAGGCGTACTGTTGCGTACCATGAATCAGGGCATGCTGTTGCAGGTTGGTTCTTGGAACACGCTGACCCCTTGTTAAAAGTAACAATCGTTCCACGTGGCTCAGCCGCTCTTGGATTTGCACAATATGTTCCAAGCGAAAACCTTCTTTTGACAAAGGAGCAGCTTTTTGATATGACTTGCATGACACTTGGTGGTCGGGCTGCTGAGCAGGTTCTTGTAGGGAGAATATCAACAGGAGCACAAAATGACTTGGAAAAAGTTACCAAGATGACATATGCCCAAGTAGCAGTTTATGGTTTCAGCGACAAAGTGGGTCTCCTTTCGTTTCCTTCAAGGATGTCCAAACCATACAGCAGTAAAACTGCGGCAATCATTGATAGCGAAGTGCGCGAATGGGTTAACAAAGCATACGAACGAACGGTAAATCTAATCGAGGAACACAAGGAACAAGTTACTCAAATTGCTGAATTGTTGCTTGAAAAAGAAGTACTTCACCAGGAGGACTTGCGGAGAATTTTGGGTGAGCGACCATTCAAGGCTATTGAACCCACCAATTATGATAGATTTAAGGAAGGCTTTAAAGAAGAGGAGGAAAAGGTAGCAACAGAAAGTACCATTGTAGATGTGCCTGAGGAAGGTGGCGGAACTTCTCCCTTAGAGCCCCAGGTTGTTCCCTGA 2397 0.4285 MNFSKIARCLSRSSRNLSHGNGRLGKLAGIPRMNAWSDGAESVFGFVRSYVSSASASSRSAFSSLVDFKSVAANPRVRRLFSSEAPKKKNYEKFYPKEKKEGPKESDKKYDSKDDHGSYRVAIKIEVHTLISSLLVMGLFISYLSSRPREQREISFQEFKNKLLEPGLVDHIAVSNKSVAKVYLRNSPRNQTDSEGVQGTLPAKEYEGQYKYYFNIGSVESFEEKLQDAQEDLGIDPHDFVPVTYSAEMVWYQELMRFAPTLLLLGSLLYMGRRMQGGLGVGGGGGSKGARGIFNIGKAHVTKVDKNTKNKIYFKDVAGCDEAKLEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGRARRRGGFSRSNDERENTLNQLLVEMDGFGTTSGVVVLAGTNRPHILDKALLRPGRFDRQIEIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLASLTPGFAGADIANVCNEAALIAARSEVTQVTMDHFEAAIDRIIGGLEKKNKVISKVERRTVAYHESGHAVAGWFLEHADPLLKVTIVPRGSAALGFAQYVPSENLLLTKEQLFDMTCMTLGGRAAEQVLVGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPSRMSKPYSSKTAAIIDSEVREWVNKAYERTVNLIEEHKEQVTQIAELLLEKEVLHQEDLRRILGERPFKAIEPTNYDRFKEGFKEEEEKVATESTIVDVPEEGGGTSPLEPQVVP* 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1225 798 Pfam ATPase family associated with various cellular activities (AAA) 352 484 IPR003959 GO:0005524|GO:0016887
Vra2g1225 798 Pfam Peptidase family M41 568 745 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g1225 798 SUPERFAMILY FtsH protease domain-like 568 754 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g1225 798 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 31 798 - -
Vra2g1225 798 CDD AAA 348 485 - -
Vra2g1225 798 Gene3D - 295 484 IPR027417 -
Vra2g1225 798 Gene3D - 486 570 - -
Vra2g1225 798 MobiDBLite consensus disorder prediction 92 114 - -
Vra2g1225 798 SMART AAA_5 347 487 IPR003593 -
Vra2g1225 798 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 558 IPR027417 -
Vra2g1225 798 MobiDBLite consensus disorder prediction 773 798 - -
Vra2g1225 798 ProSitePatterns AAA-protein family signature. 455 473 IPR003960 GO:0005524|GO:0016887
Vra2g1225 798 Gene3D - 137 250 - -
Vra2g1225 798 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 251 746 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra2g1225 798 Pfam FtsH Extracellular 131 238 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Vra2g1225 798 Pfam AAA+ lid domain 514 553 IPR041569 -
Vra2g1225 798 Gene3D Peptidase M41 571 763 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Vra2g1225 798 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 2 772 IPR005936 GO:0004176|GO:0004222|GO:0016020
Vra2g1225 798 PANTHER ATP-DEPENDENT PROTEASE 31 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1225 Vra-Chr2 17163160 17171669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1225 3 798 Miscellaneous Gene Families AT2G29080 72.750 0.0 1107