Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1215 ATGGCCAACAGCAATCTCCCTCGAAGAATCATCAAGGAAACGCAGCGTTTGCTCAGTGAGCCAGCACCTGGAATTAGTGCGTCCCCATCTGAAGACAATATGAGATATTTCAATGTGATGATCCTGGGACCAACCCAGTCACCGTACGAAGGAGGAGTATTTAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCGAAGGTTCGGTTTTTAACAAAAATATATCATCCAAACATTGATAAGCTTGGCAGAATATGTCTTGATATTCTGAAAGACAAGTGGAGTCCTGCTCTTCAGATTCGTACTGTTCTATTAAGCATACAAGCTCTATTGAGTGCACCAAACCCAGATGATCCACTTTCTGAAAACATTGCCAAGCATTGGAAATCTAACGAGGCCGAGGCTGTTGAAACAGCGAAGGAATGGACCCGATTATATGCTAGTGACGCCTGA 462 0.4329 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASDA* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1215 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Vra2g1215 153 SMART ubc_7 8 151 - -
Vra2g1215 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Vra2g1215 153 Gene3D Ubiquitin Conjugating Enzyme 1 153 IPR016135 -
Vra2g1215 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 35 2 150 - -
Vra2g1215 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Vra2g1215 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Vra2g1215 153 CDD UBCc 7 146 IPR000608 -
Vra2g1215 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1215 Vra-Chr2 16926659 16936562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1215 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.10e-11 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1215 2 16926659 16936562 Vra2g1215 2 16926659 16936562 ECH
Vra5g2811 5 35667352 35673292 Vra2g1215 2 16926659 16936562 PCT