Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1212 ATGTTATTTTACTTGGTTACGCAAAGAAGCAAGCCAGCACTAGGTTTGATTAATTGGAGCAGGAGGGTTACTCTGATGACTTGTTTCTTTAACCTTTTCAGAAAGAAAGGATCTTCCTCAGGCACTCGATTGACCGGAGTTGATTTAGATGTTTCAGAAATTCAGAATGTCAATATCTACACTTACAGGGAATTGCGAAGTGCCACCGAAGGTTTTAGTCCTTCAAACAAGATAGGACAGGGAGGTTTTGGAGAAGTCTATAAGGGAAAGCTGAGAAATGGTTCTCTGGTAGCTATAAAGGTTTTATCAGCTGAATCAAAACAAGGGGTTCGGGAGTTTTTGACAGAAATCAAGGTGATCTCTAGTATAGAGCATGAGAATCTAGTTAAGTTGCATGGATGTTGTGTGGAAGACAACCACAGGATTTTGGTATATGGCTATCTCGAGAATAACAGTCTAGCACAAACACTTATTGGTGCAGGCCATAGTAACATCCAATTTAGTTGGCCCACAAGAAGGAACATCTGTGTAGGTGTTGCCAGGGGCCTTGCATTCCTTCATGAAGAGGTTCGGCCCCACATTATCCATAGAGACATAAAATCAAGCAATGTACTACTTGACAAAGATCTCCAGCCAAAAATTTCAGATTTTGGGCTTGCAAAGCTTATCCCACCAAACCTGACCCATATCAGTACACGTGTTGCTGGAACAGTTGGTTATCTTGCTCCTGAATATGCAATCCGAAATCAAGTGACAAGAAAATCAGATGTTTATAGCTTTGGAGTTCTATTATTAGAAATTGTTAGTGGGAGGCCTAACACAAATAGACGTTTACCTGTTGAAGAACGGTATCTTCTCACAAGGGCTTGGGATTTGTATGAGGCTGGAGAGACAGAAAAATTGGTGGATGCTTTTCTAGATGGAGACTTCAATGTTGAGGAGGCAATCAGATTTTGTAAGATTGCTCTCCTTTGCACGCAGGATTCTCCTCAGCTCCGACCCTCTATGTCCATTGTGCTTGAAATGCTTTTAGGTGAAAAAGATGTGAATGAGGAGAATGTGACTAAACCAGGCATGATATTTGAATTTGTGGAAGCAAAAAGTGCATGGAAACAAAAGGGCAAGTCTGAAGAGAATGGTAAACTTATGTTGGCTGAAGGGAAGCAAGATGAGTCATCTTCTTCCGAAACCATGACTTCTTTTGCTACCATGACCTTCACAGCAATATGTGATCGAAGTAATTAA 1245 0.4088 MLFYLVTQRSKPALGLINWSRRVTLMTCFFNLFRKKGSSSGTRLTGVDLDVSEIQNVNIYTYRELRSATEGFSPSNKIGQGGFGEVYKGKLRNGSLVAIKVLSAESKQGVREFLTEIKVISSIEHENLVKLHGCCVEDNHRILVYGYLENNSLAQTLIGAGHSNIQFSWPTRRNICVGVARGLAFLHEEVRPHIIHRDIKSSNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYLAPEYAIRNQVTRKSDVYSFGVLLLEIVSGRPNTNRRLPVEERYLLTRAWDLYEAGETEKLVDAFLDGDFNVEEAIRFCKIALLCTQDSPQLRPSMSIVLEMLLGEKDVNEENVTKPGMIFEFVEAKSAWKQKGKSEENGKLMLAEGKQDESSSSETMTSFATMTFTAICDRSN* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1212 414 CDD STKc_IRAK 78 343 - -
Vra2g1212 414 ProSiteProfiles Protein kinase domain profile. 72 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1212 414 Gene3D Phosphorylase Kinase; domain 1 47 147 - -
Vra2g1212 414 Gene3D Transferase(Phosphotransferase) domain 1 148 358 - -
Vra2g1212 414 SMART serkin_6 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1212 414 PANTHER RECEPTOR-LIKE KINASE 26 400 - -
Vra2g1212 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vra2g1212 414 SUPERFAMILY Protein kinase-like (PK-like) 51 343 IPR011009 -
Vra2g1212 414 Pfam Protein kinase domain 75 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1212 414 ProSitePatterns Protein kinases ATP-binding region signature. 78 100 IPR017441 GO:0005524
Vra2g1212 414 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1212 Vra-Chr2 16846506 16851786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1212 50 360 Receptor kinase-like Gene Family AT1G56120 53.651 6.24e-106 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra2g1212 Pkinase 4.9e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1212 2 16846506 16851786 Vra2g1212 2 16846506 16851786 ECH