Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1209 ATGGATCTGACTAAGAAGCGCAAGCTTGATGAGAATGGTTTCGGTGATTCCGACCCGCTTAAACTCTCTTCCACCGAGGCGCGAAAACTCATCGAGCGCTTCACCCCGGAGCAGCTTCTCGACATCCTCCAGGACGCGGTGGCTCGCCACGCTGACGTGCTTGCCTCCGTGCGTGCTGTCGCAGACCCCGATGTGTCGCAGCGGAAACTATTCGTGCGTGGTCTTGGGTGGGACACCACCACAGACGGCCTCCGCTCACTCTTTTCCACCTACGGTGAGCTTGAGGAGGCCGTTGTGATCGTTGACAAGGTAACCGGCAAGTCCAAAGGTTACGGCTTTGTCACCTTCCGCCACGTGGACGGTGCTCTCCTCGCCCTCCGCGAACCCAGCAAGCGCATAGACGGGCGCGTGACTGTCACGCAGCTCGCTGCAGCGGGGAACTCCGCATCGAATGCCAACGCAGCCGATGTTGGGCTCAGGAAGATCTACGTTGCCAACGTGCCGCCGGACCTTCCCGCGGACAAGCTCCTAGCGCATTTTTCTGTGTATGGTGAGATCGAAGAGGGACCCTTAGGGTTTGATAAACAAACTGGAAAATCAAAGGGGTTTGCGCTTTTTGTTTATAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTCAAGACTGTGGAAGGAAGGCAATTGAGTTGTAAACTGGCGATAACAGATGGTAAGCAAGGGAAGCGAGCCGGACCAGATTCGGGTCAGGCCCATGGGAATGTTCAGCACGGTCATGGGGATGGAGTCGGGGCTGGAATGGGGATGCCTCCTGCAGCGGGGTCTGGGCCGGGGCAGTATGGCGGCCCGCAATATGGGGGACCGGTTGGGTTGGGTTCGTATGGTGGGTTTGGTGGACAACCTCCGTTAGGTAACCATAATCATCCTCTGAATTCATCCAATCCCGTACCCGGTTCTATGGCGGGAGCTGGTGGTTACGGTGCTGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGTTCTGCGGGATTTGGTGCTGCAGGTGGGTTAGGAGGGGCTGGTGGAGGTGCTGGTGTTGGTGGTGGGCTTGGAGGAGCAAGTGGTGGTGCGGGTTCTTTGTATAGATTGCCTGGTTCTGGTGGCATGCCTGCAGGTGGTGGAGGGTATCCGGAGGGTGGTCATTATGGTTTATCAGGTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCAGTGCCTAGAGTTCCACCTGGTTCGATGTACCCCAGTGTGCCTCCTTACTACTAA 1305 0.5716 MDLTKKRKLDENGFGDSDPLKLSSTEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSTYGELEEAVVIVDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSASNANAADVGLRKIYVANVPPDLPADKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVGLGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSAGFGAAGGLGGAGGGAGVGGGLGGASGGAGSLYRLPGSGGMPAGGGGYPEGGHYGLSGSAGYQNQHHPPSGASPVPRVPPGSMYPSVPPYY* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1209 434 SMART rrm1_1 161 233 IPR000504 GO:0003723
Vra2g1209 434 SMART rrm1_1 69 141 IPR000504 GO:0003723
Vra2g1209 434 MobiDBLite consensus disorder prediction 415 434 - -
Vra2g1209 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Vra2g1209 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Vra2g1209 434 MobiDBLite consensus disorder prediction 387 434 - -
Vra2g1209 434 PANTHER GEO13361P1-RELATED 1 399 - -
Vra2g1209 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Vra2g1209 434 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Vra2g1209 434 Gene3D - 59 148 IPR012677 -
Vra2g1209 434 CDD RRM_RBM24_RBM38_like 160 235 - -
Vra2g1209 434 Gene3D - 149 270 IPR012677 -
Vra2g1209 434 SUPERFAMILY RNA-binding domain, RBD 58 143 IPR035979 GO:0003676
Vra2g1209 434 MobiDBLite consensus disorder prediction 238 317 - -
Vra2g1209 434 PANTHER UBP1-ASSOCIATED PROTEIN 2C 1 399 - -
Vra2g1209 434 CDD RRM_RBM24_RBM38_like 68 142 - -
Vra2g1209 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1209 Vra-Chr2 16736665 16742506 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1209 156 235 C2H2 Transcription Factor Family AT2G19380 38.750 2.30e-10 60.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1209 2 16736665 16742506 Vra2g1209 2 16736665 16742506 ECH