Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1193 ATGGCTGACATAGCGGGTCTGGTTGAGGCTGCAGGGGCAAGATTTGGCTCATTGGAGCTTATTGGGCAAGGGTCATTCGGCGACGTGTATAAAGGGTTTGACAAGGAGCTAAACAAGGAAGTTGCTATCAAAATGATTGATTTGGAAGAATCAGAGGATGAAATAGAAGACATTCAGAAGGAAATTTCTGTTCTGTCCCAATGTCGATCTGCATACATTACTGAGTATTATGGTTCCTTTCTTAATCAAACTAAACTTTGGATAATAATGGAATACATGGCTGGAGGCTCTGTTGCTGATCTACTGCAATCAGGTCCCCCACTTGATGAAATGTCAATTGCTTGCATTCTACGTGATTTACTTCATGCAATTGATTACCTACATACTGAAGGAAAAATTCATAGAGACATTAAAGCTGCAAACATTTTATTAACTGAGAATGGTGATGTAAAGGTTGCCGATTTTGGTGTTTCTGCACAGTTAACAAGAACCATATCAAGGAGAAAGACCTTTGTAGGAACACCATTTTGGATGGCACCCGAGGTTATTCAAAATTCAGAAGGATATAATGAAAAGGCAGATATCTGGTCTTTGGGGATTACTGCAATAGAGATGGCAAAAGGGGAGCCTCCACTTGCAGATCTTCATCCAATGAGAGTGCTTTTCATCATACCGCGAGAGAATCCACCACAACTAGATGAACACTTTTCTCGCTATATGAAAGAATTTGTGTCATTGTGCTTGAAAAAGGTTCCTGCTGAGAGACCTAGTGCTAAAGAGCTTCTCAGACATCGTTTCATTCGGAATGCCAGGAAGAGTCCTAAGCTATTGGAGAGAATAAGGGAGCGTCCAAAGTTCCAAATAAAGGAAGATGAAGCACCACCTAGAAATTCCCCAAGGGGGATGGGGGAGGCATATGATACAGTTAAGGTTGTGAAAGATTTAAGGGGTGATGAGACTAATCAGCCTAGTGGCCAAGGTAAAACCCTGAAAAGTTCTGGGTGGGACTTCAGCATTAGTGGATCTCAGGGTACTGGAACCTTTCGTAGTGTGTCACGACCACCTCAATTTAGAGATAAGAAAACTGAAGTTTCAAATCATCAGCTTACCCAAAAAAAAAGTCCAGAGAGTGGCTATCAGGTGGGATCTGGCAATAAAAATGAGTTGCTAGAGGCTTCTTTTGGAAAAGATTCAGGAATTCCTTACCATGATGAACATCTGGATAATCATCTTGATGATCAGGATGAGTTGTATGGGAATGGATTGGGAACTGTTGTTGTTCGATCTCCAAAAGGACCACAGTCATCACTGTTTCGTGACCAAAGTTCCCGTTCTAGCAGCAGCTATGCTTCGTTTGAAGACGTTTCTACTAGCGGAACTGTGGTTTTGCGTAATCAGCACGATGATTCTGATTCTCCACAGACACCAAGGTCCCGATTGGGACTTAATAACAGAAATTCAAATGCCTCATTTGAAGATAGTGCTACAAATCTTGCTGAGGCAAAGGCTGCTATCCAAGGTGGATTGAGGAAAATGAATGTCCGGGATAGATTTGCGCTGGGGAAACTCAACAATGATGTACAAGAAAGCAGGAGAGATCAAATGTCAACCAGCTCTGATTCTTCCAGACCATCTCGTGAATACATGGATGCACAAAAGGGGATTTCAAGATCACAGTATTATATTGATGATGAAGAAAGTGCCAAAATAATCTCATCCTCTGCGCCGTTATCTGTTTTACTTATTCCTTCATTGAAAGAGGCCATTGCTGAGGATCCAGAAGGGCCAATTGTGCAAATTATTATCAATGCTCTTTTAAACATGGAGAAGACAAAGCCCCAATCCTGTGATGCTCTTGTCAAAAACTTGCTTCAGCGGTTGGCAAGTTCAAAGGAATTATCATTGAAGGACCTGCAAGAACTGGCTGGCCGATTACTTAGTAAGACTAAGTCAGCTGAAGAAGCCCGAAATGCAGAGACAGATCTCAAGAAGAAACAAAACAAGGAAATTCATTCAAATAGCAATTTAAGTCCTCTCGCAAGATTTCTTCTCTCAAGATGGCAAGGCCAAGCCTCACGGGATCTAAATGCATCTTGA 2097 0.4177 MADIAGLVEAAGARFGSLELIGQGSFGDVYKGFDKELNKEVAIKMIDLEESEDEIEDIQKEISVLSQCRSAYITEYYGSFLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMSIACILRDLLHAIDYLHTEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRYMKEFVSLCLKKVPAERPSAKELLRHRFIRNARKSPKLLERIRERPKFQIKEDEAPPRNSPRGMGEAYDTVKVVKDLRGDETNQPSGQGKTLKSSGWDFSISGSQGTGTFRSVSRPPQFRDKKTEVSNHQLTQKKSPESGYQVGSGNKNELLEASFGKDSGIPYHDEHLDNHLDDQDELYGNGLGTVVVRSPKGPQSSLFRDQSSRSSSSYASFEDVSTSGTVVLRNQHDDSDSPQTPRSRLGLNNRNSNASFEDSATNLAEAKAAIQGGLRKMNVRDRFALGKLNNDVQESRRDQMSTSSDSSRPSREYMDAQKGISRSQYYIDDEESAKIISSSAPLSVLLIPSLKEAIAEDPEGPIVQIIINALLNMEKTKPQSCDALVKNLLQRLASSKELSLKDLQELAGRLLSKTKSAEEARNAETDLKKKQNKEIHSNSNLSPLARFLLSRWQGQASRDLNAS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1193 698 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vra2g1193 698 Coils Coil 635 668 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 530 545 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 278 305 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 429 493 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 317 336 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 368 387 - -
Vra2g1193 698 CDD STKc_MST3_like 14 287 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 523 554 - -
Vra2g1193 698 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1193 698 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1193 698 MobiDBLite consensus disorder prediction 649 673 - -
Vra2g1193 698 Pfam Protein kinase domain 18 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra2g1193 698 MobiDBLite consensus disorder prediction 398 415 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 341 493 - -
Vra2g1193 698 Gene3D Transferase(Phosphotransferase) domain 1 13 299 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 278 297 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 319 336 - -
Vra2g1193 698 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 696 - -
Vra2g1193 698 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 696 - -
Vra2g1193 698 MobiDBLite consensus disorder prediction 649 670 - -
Vra2g1193 698 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Vra2g1193 698 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1193 Vra-Chr2 16102336 16137375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1193 1 695 MAP Kinase Kinase Kinase Kinase AT3G15220 63.533 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-YSK Vra2g1193 Pkinase 1e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1193 2 16102336 16137375 Vra2g1193 2 16102336 16137375 ECH