Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra2g1082 ATGGAAACCGAGGGTGAAGAGCATGCTTCAAAATTGCTTCGAGCTCAAAATCATGTTTGGAATCATATTTTAAAATTCATAAATTCTGTGTCTCTTAAGTGTGCTATTGAGTTAAGCATACCAGATATCATACACAACTATGGCCAACCTATGTCACTCTCACAACTCATTGCTTCATTACCACTCCACCCATCAAAGATTTCCTTTATAACCCGCTTGATGAAAATTTTGACTCATTCTGGTTTCTTCTCTGAACACCATGCCACCCCAAATCAGCCTGAAGTTATGTATCTACTAACTGATGCATCTATGTTACTCCTAAAGGACCATCCCTTTAGTATGAAACCTGTGACGCAATTAATATTTAATCCAGTTATGATGAATCCATGGTTTCAATTCTCTACCTGGTTCACGAATGAAACCCCTTCACCGTTTCACAGTGAAAATGGTATGGGATTTTGGGATTTTGCTGGACGTGAGCCTAATATAAATAACCATTTCAATGAAGTCATGGCTATGGACAGTCGATTGGTTTCCAATGTGGTGATTGAGAAGTATAAGAGATTGTTCGAGGGAATAGAATCATTGGTTGATGTTGGAGGAGGAACAGGGACAATGGCTAAGGTCATTGTTGAGTCCTTCCCACATGTAAAGTGCATTGTATTTGATCTGCCACATGTTGTTGCAGGCTTGGAAGAAACTCAGAACATAAAATATGTCGGAGGAGACATGTTAGAAGCAATTCCTCATGCTGGTTCTATTATGTTGAAGTGGGTATTGCATGACTGGAAGGACAAGGAATGTGTGAAAATACTGAAAAATTGCAAGGAGGCAATAGCTAGCGACGGGAGGGTTCTTATCATAGACATTGTGATGGAGAATAAGAAGGAAGACCATGAATTGACTGAGGCGCAATTTTTCTTTGATATGTACATGATGATGTTGTTCGCTGGAAAAGAAAGATACGAGAAAGAGTGGGCCAACCTAATTCTCTCTGCTGGTTTTAGTAACTACAAGATTACTCCCACTGTGGGATTAGTGTCTATTATTGAGGTTTATCCATAG 1065 0.3944 METEGEEHASKLLRAQNHVWNHILKFINSVSLKCAIELSIPDIIHNYGQPMSLSQLIASLPLHPSKISFITRLMKILTHSGFFSEHHATPNQPEVMYLLTDASMLLLKDHPFSMKPVTQLIFNPVMMNPWFQFSTWFTNETPSPFHSENGMGFWDFAGREPNINNHFNEVMAMDSRLVSNVVIEKYKRLFEGIESLVDVGGGTGTMAKVIVESFPHVKCIVFDLPHVVAGLEETQNIKYVGGDMLEAIPHAGSIMLKWVLHDWKDKECVKILKNCKEAIASDGRVLIIDIVMENKKEDHELTEAQFFFDMYMMMLFAGKERYEKEWANLILSAGFSNYKITPTVGLVSIIEVYP* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra2g1082 354 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Vra2g1082 354 PIRSF O-mtase 1 354 IPR016461 GO:0008168
Vra2g1082 354 Gene3D - 2 106 IPR036388 -
Vra2g1082 354 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 353 IPR029063 -
Vra2g1082 354 Gene3D Vaccinia Virus protein VP39 107 354 IPR029063 -
Vra2g1082 354 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 354 IPR016461 GO:0008168
Vra2g1082 354 Pfam O-methyltransferase domain 130 336 IPR001077 GO:0008171
Vra2g1082 354 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Vra2g1082 354 PANTHER O-METHYLTRANSFERASE 5 354 IPR016461 GO:0008168
Vra2g1082 354 PANTHER ORCINOL O-METHYLTRANSFERASE 5 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra2g1082 Vra-Chr2 12177567 12179678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra2g1082 30 352 Monolignol Biosynthesis Gene Families AT5G54160 32.317 4.32e-54 180
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1216 2 16948007 16954488 Vra2g1082 2 12177567 12179678 PCT